WormBase Tree Display for CDS: OVOC24
expand all nodes | collapse all nodes | view schema
| OVOC24 | Evidence | Curator_confirmed | WBPerson2062 | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | OVOC_OM1b_1 | |||
| Structure | Source_exons (30) | |||||
| DB_info | DB_remark | OVO-XNP-1 protein; contains similarity to Pfam domains PF00176 (SNF2-related domain), PF00271 (Helicase conserved C-terminal domain); contains similarity to Interpro domains IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR001650 (Helicase, C-terminal domain-like), IPR038718 (SNF2-like, N-terminal domain superfamily), IPR000330 (SNF2, N-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain) | ||||
| Origin | From_laboratory | MBM | ||||
| Species | Onchocerca volvulus | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00236833 | ||||
| Corresponding_transcript | OVOC24.1 | |||||
| Corresponding_protein | OVP13700 | |||||
| Matching_cDNA | ovolvulus_GG641|c42_g2_i1 | Inferred_automatically | transcript_builder.pl | |||
| ovolvulus_GG641|c42_g6_i1 | Inferred_automatically | transcript_builder.pl | ||||
| Brief_identification | Transcriptional regulator ATRX homolog | Person_evidence | WBPerson2973 | |||
| RNASeq_FPKM | WBls:0000104 (15) | |||||
| WBls:0000107 | 7.90911 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395 | |||
| WBls:0000108 | 33.0764 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392 | |||
| 41.1998 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393 | ||||
| 5.2906 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391 | ||||
| WBls:0000664 | 32.1743 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396 | |||
| 35.8102 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397 | ||||
| Remark | [140414 es9] Splice sites of OVOC24 gene model corrected using RNA-Seq and protein evidence data. | Curator_confirmed | WBPerson2062 | |||
| Method | curated |
