WormBase Tree Display for CDS: OVOC297
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| OVOC297 | Evidence | Curator_confirmed | WBPerson2062 | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | OVOC_OM1b_7 | |||
| Structure | Source_exons (48) | |||||
| DB_info | DB_remark | OVO-ANC-1 protein; contains similarity to Pfam domains PF00307 (Calponin homology (CH) domain), PF10541 (Nuclear envelope localisation domain); contains similarity to Interpro domains IPR001715 (Calponin homology domain), IPR012315 (KASH domain), IPR036872 (CH domain superfamily), IPR030265 () | ||||
| Origin | From_laboratory | MBM | ||||
| Species | Onchocerca volvulus | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00237106 | ||||
| Corresponding_transcript | OVOC297.1 | |||||
| Corresponding_protein | OVP13248 | |||||
| Matching_cDNA | AI132820 | Inferred_automatically | transcript_builder.pl | |||
| ovolvulus_GG626|c177_g1_i1 | Inferred_automatically | transcript_builder.pl | ||||
| ovolvulus_GG626|c187_g4_i11 | Inferred_automatically | transcript_builder.pl | ||||
| ovolvulus_GG626|c206_g1_i1 | Inferred_automatically | transcript_builder.pl | ||||
| ovolvulus_GG626|c206_g2_i1 | Inferred_automatically | transcript_builder.pl | ||||
| Brief_identification | Spectrin-like nuclear envelope protein homolog | Person_evidence | WBPerson2973 | |||
| RNASeq_FPKM | WBls:0000104 (15) | |||||
| WBls:0000107 | 17.8788 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395 | |||
| WBls:0000108 | 23.7243 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392 | |||
| 4.01334 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391 | ||||
| 40.9364 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393 | ||||
| WBls:0000664 | 43.1491 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397 | |||
| 78.7124 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396 | ||||
| Remark | [140306 es9] Merged OVOC297 and OVOC298 based on RNA-Seq, SL1 and protein evidence data. | Curator_confirmed | WBPerson2062 | |||
| Method | curated |
