WormBase Tree Display for CDS: OVOC299
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| OVOC299 | Evidence | Curator_confirmed | WBPerson2062 | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | OVOC_OM1b_7 | |||
| Structure | Source_exons | 1 | 97 | |||
| 3642 | 3779 | |||||
| 3953 | 4147 | |||||
| 4537 | 4704 | |||||
| 5045 | 5245 | |||||
| 5598 | 5785 | |||||
| 6329 | 6445 | |||||
| 6660 | 6799 | |||||
| 7150 | 7408 | |||||
| DB_info | DB_remark | contains similarity to Pfam domain PF00013 (KH domain); contains similarity to Interpro domains IPR016021 (), IPR004087 (K Homology domain), IPR036612 (K Homology domain, type 1 superfamily), IPR004088 (K Homology domain, type 1), IPR040160 (Eukaryotic translation initiation factor 4E-binding protein Mextli) | ||||
| Origin | From_laboratory | MBM | ||||
| Species | Onchocerca volvulus | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00237108 | ||||
| Corresponding_transcript | OVOC299.1 | |||||
| Corresponding_protein | OVP12990 | |||||
| Matching_cDNA | AA294304 | Inferred_automatically | transcript_builder.pl | |||
| AA901490 | Inferred_automatically | transcript_builder.pl | ||||
| AI096321 | Inferred_automatically | transcript_builder.pl | ||||
| AI130619 | Inferred_automatically | transcript_builder.pl | ||||
| AI132811 | Inferred_automatically | transcript_builder.pl | ||||
| AW308600 | Inferred_automatically | transcript_builder.pl | ||||
| BE899654 | Inferred_automatically | transcript_builder.pl | ||||
| BF400441 | Inferred_automatically | transcript_builder.pl | ||||
| BF400476 | Inferred_automatically | transcript_builder.pl | ||||
| ovolvulus_GG626|c202_g6_i5 | Inferred_automatically | transcript_builder.pl | ||||
| Brief_identification | Mextli homolog | Person_evidence | WBPerson2973 | |||
| RNASeq_FPKM | WBls:0000104 (15) | |||||
| WBls:0000107 | 78.0737 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395 | |||
| WBls:0000108 | 105.572 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392 | |||
| 194.198 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393 | ||||
| 62.2358 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391 | ||||
| WBls:0000664 | 38.9068 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397 | |||
| 52.9487 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396 | ||||
| Remark | [140306 es9] Splice sites of OVOC299 gene model corrected using RNA-Seq and protein evidence data. | Curator_confirmed | WBPerson2062 | |||
| Method | curated |
