WormBase Tree Display for CDS: OVOC346
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| OVOC346 | Evidence | Curator_confirmed | WBPerson2062 | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | OVOC_OM1b_7 | |||
| Structure | Source_exons | 1 | 135 | |||
| 734 | 892 | |||||
| 1391 | 1582 | |||||
| 2309 | 2458 | |||||
| 2851 | 3059 | |||||
| 3499 | 3622 | |||||
| DB_info | DB_remark | OVO-UFD-1 protein; contains similarity to Pfam domain PF03152 (Ubiquitin fusion degradation protein UFD1); contains similarity to Interpro domains IPR042299 (Ufd1-like, Nn domain), IPR004854 (Ubiquitin fusion degradation protein Ufd1-like) | ||||
| Origin | From_laboratory | MBM | ||||
| Species | Onchocerca volvulus | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00237155 | ||||
| Corresponding_transcript | OVOC346.1 | |||||
| Corresponding_protein | OVP13254 | |||||
| Matching_cDNA | AI239325 | Inferred_automatically | transcript_builder.pl | |||
| AI374067 | Inferred_automatically | transcript_builder.pl | ||||
| AW288177 | Inferred_automatically | transcript_builder.pl | ||||
| AW739444 | Inferred_automatically | transcript_builder.pl | ||||
| BF727500 | Inferred_automatically | transcript_builder.pl | ||||
| ovolvulus_GG626|c170_g1_i1 | Inferred_automatically | transcript_builder.pl | ||||
| R95335 | Inferred_automatically | transcript_builder.pl | ||||
| Brief_identification | Ubiquitin fusion degradation protein 1 homolog | Person_evidence | WBPerson2973 | |||
| RNASeq_FPKM | WBls:0000104 (15) | |||||
| WBls:0000107 | 99.5181 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395 | |||
| WBls:0000108 | 111.118 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391 | |||
| 172.04 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392 | ||||
| 183.731 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393 | ||||
| WBls:0000664 | 167.117 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396 | |||
| 300.789 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397 | ||||
| Remark | [140306 es9] Splice sites of OVOC346 gene model corrected using RNA-Seq, protein evidence, SL1 and mRNA data. | Curator_confirmed | WBPerson2062 | |||
| Method | curated |
