WormBase Tree Display for CDS: OVOC368
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OVOC368 | SMap | S_parent | Sequence | OVOC_OM1b_7 | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 117 | |||
307 | 475 | |||||
655 | 800 | |||||
929 | 1016 | |||||
1299 | 1458 | |||||
1578 | 1777 | |||||
1954 | 2283 | |||||
2666 | 2793 | |||||
3173 | 3304 | |||||
3428 | 3766 | |||||
DB_info | DB_remark | contains similarity to Pfam domain PF00149 (Calcineurin-like phosphoesterase); contains similarity to Interpro domains IPR029052 (Metallo-dependent phosphatase-like), IPR006186 (Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase), IPR004843 (Calcineurin-like phosphoesterase domain, ApaH type) | ||||
Origin | From_laboratory | MGM | ||||
Species | Onchocerca volvulus | |||||
Properties | Coding | CDS | ||||
Prediction_status | Confirmed | |||||
Visible | Gene | WBGene00237177 | ||||
Corresponding_transcript | OVOC368.1 | |||||
OVOC368.2 | ||||||
Corresponding_protein | OVP11573 | |||||
Matching_cDNA | ovolvulus_GG626|c168_g1_i1 | Inferred_automatically | transcript_builder.pl | |||
ovolvulus_GG626|c168_g2_i1 | Inferred_automatically | transcript_builder.pl | ||||
ovolvulus_GG626|c168_g2_i6 | Inferred_automatically | transcript_builder.pl | ||||
RNASeq_FPKM | WBls:0000104 (13) | |||||
WBls:0000107 | 0.208258 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395 | |||
WBls:0000108 | 0.060731 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391 | |||
0.192445 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393 | ||||
1.16512 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392 | ||||
WBls:0000664 | 0.055981 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396 | |||
0.056871 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397 | ||||
Method | curated |