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WormBase Tree Display for CDS: OVOC388b

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Name Class

OVOC388bEvidenceCurator_confirmedWBPerson4025
SMapS_parentSequenceOVOC_OM1b_7
StructureSource_exons142
224493
561720
906934
DB_infoDB_remarkOVO-AVR-14 protein; contains similarity to Pfam domain PF02932 (Neurotransmitter-gated ion-channel transmembrane region); contains similarity to Interpro domains IPR006028 (Gamma-aminobutyric acid A receptor/Glycine receptor alpha), IPR036719 (Neurotransmitter-gated ion-channel transmembrane domain superfamily), IPR006201 (Neurotransmitter-gated ion-channel), IPR006029 (Neurotransmitter-gated ion-channel transmembrane domain)
OriginFrom_laboratoryHX
SpeciesOnchocerca volvulus
PropertiesCodingCDS
Prediction_statusConfirmed
IsoformCurator_confirmedWBPerson4025
Feature_evidenceWBsf925399
VisibleGeneWBGene00237197
Corresponding_transcriptOVOC388b.1
Corresponding_proteinOVP14767
Brief_identificationPutative cys-loop ligand gated ion channel subunitPerson_evidenceWBPerson2973
RNASeq_FPKMWBls:0000104 (15)
WBls:00001075.2122From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395
WBls:00001080.248766From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391
0.675422From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392
0From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393
WBls:00006641.05361From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396
4.80718From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397
Remark[150422 gw3] Created this isoform based on the RNASeq splice data and the SL1 site.Curator_confirmedWBPerson4025
Feature_evidenceWBsf925399
From_analysisRNASeq
Methodcurated