WormBase Tree Display for CDS: OVOC388b
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OVOC388b | Evidence | Curator_confirmed | WBPerson4025 | |||
---|---|---|---|---|---|---|
SMap | S_parent | Sequence | OVOC_OM1b_7 | |||
Structure | Source_exons | 1 | 42 | |||
224 | 493 | |||||
561 | 720 | |||||
906 | 934 | |||||
DB_info | DB_remark | OVO-AVR-14 protein; contains similarity to Pfam domain PF02932 (Neurotransmitter-gated ion-channel transmembrane region); contains similarity to Interpro domains IPR006028 (Gamma-aminobutyric acid A receptor/Glycine receptor alpha), IPR036719 (Neurotransmitter-gated ion-channel transmembrane domain superfamily), IPR006201 (Neurotransmitter-gated ion-channel), IPR006029 (Neurotransmitter-gated ion-channel transmembrane domain) | ||||
Origin | From_laboratory | HX | ||||
Species | Onchocerca volvulus | |||||
Properties | Coding | CDS | ||||
Prediction_status | Confirmed | |||||
Isoform | Curator_confirmed | WBPerson4025 | ||||
Feature_evidence | WBsf925399 | |||||
Visible | Gene | WBGene00237197 | ||||
Corresponding_transcript | OVOC388b.1 | |||||
Corresponding_protein | OVP14767 | |||||
Brief_identification | Putative cys-loop ligand gated ion channel subunit | Person_evidence | WBPerson2973 | |||
RNASeq_FPKM | WBls:0000104 (15) | |||||
WBls:0000107 | 5.2122 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395 | |||
WBls:0000108 | 0.248766 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391 | |||
0.675422 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392 | ||||
0 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393 | ||||
WBls:0000664 | 1.05361 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396 | |||
4.80718 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397 | ||||
Remark | [150422 gw3] Created this isoform based on the RNASeq splice data and the SL1 site. | Curator_confirmed | WBPerson4025 | |||
Feature_evidence | WBsf925399 | |||||
From_analysis | RNASeq | |||||
Method | curated |