WormBase Tree Display for CDS: OVOC413
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| OVOC413 | SMap | S_parent | Sequence | OVOC_OM1b_7 | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (22) | |||||
| DB_info | DB_remark | OVO-TAT-5 protein; contains similarity to Pfam domains PF00122 (E1-E2 ATPase), PF00702 (haloacid dehalogenase-like hydrolase), PF16209 (Phospholipid-translocating ATPase N-terminal), PF16212 (Phospholipid-translocating P-type ATPase C-terminal); contains similarity to Interpro domains IPR023298 (P-type ATPase, transmembrane domain superfamily), IPR036412 (HAD-like superfamily), IPR008250 (P-type ATPase, A domain superfamily), IPR032630 (P-type ATPase, C-terminal), IPR001757 (P-type ATPase), IPR023299 (P-type ATPase, cytoplasmic domain N), IPR032631 (P-type ATPase, N-terminal), IPR030355 (), IPR023214 (HAD superfamily), IPR006539 (P-type ATPase, subfamily IV) | ||||
| Origin | From_laboratory | MGM | ||||
| Species | Onchocerca volvulus | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00237222 | ||||
| Corresponding_transcript | OVOC413.1 | |||||
| Corresponding_protein | OVP04472 | |||||
| Matching_cDNA | ovolvulus_GG638|c64_g1_i2 | Inferred_automatically | transcript_builder.pl | |||
| ovolvulus_GG638|c64_g1_i15 | Inferred_automatically | transcript_builder.pl | ||||
| ovolvulus_GG638|c64_g1_i20 | Inferred_automatically | transcript_builder.pl | ||||
| RNASeq_FPKM | WBls:0000104 (15) | |||||
| WBls:0000107 | 16.6694 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395 | |||
| WBls:0000108 | 21.5969 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391 | |||
| 41.5139 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392 | ||||
| 43.6403 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393 | ||||
| WBls:0000664 | 31.2375 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397 | |||
| 37.2035 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396 | ||||
| Method | curated |
