WormBase Tree Display for CDS: OVOC414
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OVOC414 | Evidence | Curator_confirmed | WBPerson2062 | |||
---|---|---|---|---|---|---|
SMap | S_parent | Sequence | OVOC_OM1b_7 | |||
Structure | Source_exons (32) | |||||
DB_info | DB_remark | contains similarity to Pfam domains PF01388 (ARID/BRIGHT DNA binding domain), PF12031 (SWI/SNF-like complex subunit BAF250/Osa); contains similarity to Interpro domains IPR036431 (ARID DNA-binding domain superfamily), IPR033388 (SWI/SNF-like complex subunit BAF250, C-terminal), IPR011989 (Armadillo-like helical), IPR021906 (SWI/SNF-like complex subunit BAF250/Osa), IPR016024 (Armadillo-type fold), IPR001606 (ARID DNA-binding domain) | ||||
Origin | From_laboratory | MBM | ||||
Species | Onchocerca volvulus | |||||
Properties | Coding | CDS | ||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00237223 | ||||
Corresponding_transcript | OVOC414.1 | |||||
Corresponding_protein | OVP13437 | |||||
Brief_identification | Trithorax group protein osa homolog | Person_evidence | WBPerson2973 | |||
RNASeq_FPKM | WBls:0000104 (15) | |||||
WBls:0000107 | 50.7814 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395 | |||
WBls:0000108 | 108.132 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392 | |||
48.8862 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391 | ||||
94.7308 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393 | ||||
WBls:0000664 | 27.283 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396 | |||
73.3873 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397 | ||||
Remark | [140214 es9] Merged OVOC414, OVOC415 and OVOC416 based on RNA-Seq and Compara data. | Curator_confirmed | WBPerson2062 | |||
Method | curated |