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WormBase Tree Display for CDS: OVOC414

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Name Class

OVOC414EvidenceCurator_confirmedWBPerson2062
SMapS_parentSequenceOVOC_OM1b_7
StructureSource_exons (32)
DB_infoDB_remarkcontains similarity to Pfam domains PF01388 (ARID/BRIGHT DNA binding domain), PF12031 (SWI/SNF-like complex subunit BAF250/Osa); contains similarity to Interpro domains IPR036431 (ARID DNA-binding domain superfamily), IPR033388 (SWI/SNF-like complex subunit BAF250, C-terminal), IPR011989 (Armadillo-like helical), IPR021906 (SWI/SNF-like complex subunit BAF250/Osa), IPR016024 (Armadillo-type fold), IPR001606 (ARID DNA-binding domain)
OriginFrom_laboratoryMBM
SpeciesOnchocerca volvulus
PropertiesCodingCDS
Prediction_statusPartially_confirmed
VisibleGeneWBGene00237223
Corresponding_transcriptOVOC414.1
Corresponding_proteinOVP13437
Brief_identificationTrithorax group protein osa homologPerson_evidenceWBPerson2973
RNASeq_FPKMWBls:0000104 (15)
WBls:000010750.7814From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395
WBls:0000108108.132From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392
48.8862From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391
94.7308From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393
WBls:000066427.283From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396
73.3873From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397
Remark[140214 es9] Merged OVOC414, OVOC415 and OVOC416 based on RNA-Seq and Compara data.Curator_confirmedWBPerson2062
Methodcurated