WormBase Tree Display for CDS: OVOC427a
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OVOC427a | Evidence | Curator_confirmed | WBPerson2062 | |||
---|---|---|---|---|---|---|
WBPerson4055 | ||||||
SMap | S_parent | Sequence | OVOC_OM1b_7 | |||
Structure | Source_exons (11) | |||||
DB_info | DB_remark | OVO-UNC-75 protein; contains similarity to Pfam domain PF00076 (RNA recognition motif); contains similarity to Interpro domains IPR035979 (RNA-binding domain superfamily), IPR012677 (Nucleotide-binding alpha-beta plait domain superfamily), IPR000504 (RNA recognition motif domain) | ||||
Origin | From_laboratory | MGM | ||||
Species | Onchocerca volvulus | |||||
Properties | Coding | CDS | ||||
Prediction_status | Confirmed | |||||
Isoform | Curator_confirmed | WBPerson4055 | ||||
Feature_evidence | WBsf938991 | |||||
Visible | Gene | WBGene00237236 | ||||
Corresponding_transcript | OVOC427a.1 | |||||
Corresponding_protein | OVP14675 | |||||
Matching_cDNA | AW499109 | Inferred_automatically | transcript_builder.pl | |||
RNASeq_FPKM | WBls:0000104 (14) | |||||
WBls:0000107 | 7.32735 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395 | |||
WBls:0000108 | 10.4842 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391 | |||
15.2408 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392 | ||||
21.301 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393 | ||||
WBls:0000664 | 14.6975 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397 | |||
26.9352 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396 | ||||
Remark | [150213 mh6] Created this isoform based on the RNASeq splice data and the SL1 site. | Curator_confirmed | WBPerson4055 | |||
Feature_evidence | WBsf938991 | |||||
From_analysis | RNASeq | |||||
[150213 mh6] Created this isoform based on the RNASeq splice data. | Curator_confirmed | WBPerson4055 | ||||
From_analysis | RNASeq | |||||
Method | curated |