WormBase Tree Display for CDS: OVOC434
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| OVOC434 | Evidence | Curator_confirmed | WBPerson2062 | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | OVOC_OM1b_7 | |||
| Structure | Source_exons (20) | |||||
| DB_info | DB_remark | contains similarity to Pfam domains PF01266 (FAD dependent oxidoreductase), PF01571 (Aminomethyltransferase folate-binding domain), PF08669 (Glycine cleavage T-protein C-terminal barrel domain), PF16350 (FAD dependent oxidoreductase central domain); contains similarity to Interpro domains IPR006222 (Aminomethyltransferase, folate-binding domain), IPR036188 (FAD/NAD(P)-binding domain superfamily), IPR027266 (GTP-binding protein TrmE/Aminomethyltransferase GcvT, domain 1), IPR006076 (FAD dependent oxidoreductase), IPR029043 (Glycine cleavage T-protein/YgfZ, C-terminal), IPR032503 (FAD dependent oxidoreductase, central domain), IPR013977 (Glycine cleavage T-protein, C-terminal barrel domain) | ||||
| Origin | From_laboratory | MBM | ||||
| Species | Onchocerca volvulus | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00237243 | ||||
| Corresponding_transcript | OVOC434.1 | |||||
| Corresponding_protein | OVP13995 | |||||
| Brief_identification | Pyruvate dehydrogenase phosphatase regulatory subunit, mitochondrial homolog | Person_evidence | WBPerson2973 | |||
| RNASeq_FPKM | WBls:0000104 (15) | |||||
| WBls:0000107 | 16.6644 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395 | |||
| WBls:0000108 | 17.1439 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391 | |||
| 48.5377 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392 | ||||
| 64.6307 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393 | ||||
| WBls:0000664 | 39.8743 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396 | |||
| 40.2614 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397 | ||||
| Remark | [140414 es9] Splice sites of OVOC434 gene model corrected using RNA-Seq and protein evidence data. | Curator_confirmed | WBPerson2062 | |||
| Method | curated |
