WormBase Tree Display for CDS: OVOC441
expand all nodes | collapse all nodes | view schema
OVOC441 | Evidence | Curator_confirmed | WBPerson2062 | |||
---|---|---|---|---|---|---|
SMap | S_parent | Sequence | OVOC_OM1b_7 | |||
Structure | Source_exons (11) | |||||
DB_info | DB_remark | OVO-TBA-5 protein; contains similarity to Pfam domains PF00091 (Tubulin/FtsZ family, GTPase domain), PF03953 (Tubulin C-terminal domain); contains similarity to Interpro domains IPR002452 (Alpha tubulin), IPR000217 (Tubulin), IPR003008 (Tubulin/FtsZ, GTPase domain), IPR023123 (Tubulin, C-terminal), IPR018316 (Tubulin/FtsZ, 2-layer sandwich domain), IPR037103 (Tubulin/FtsZ-like, C-terminal domain), IPR036525 (Tubulin/FtsZ, GTPase domain superfamily), IPR008280 (Tubulin/FtsZ, C-terminal) | ||||
Origin | From_laboratory | MBM | ||||
Species | Onchocerca volvulus | |||||
Properties | Coding | CDS | ||||
Prediction_status | Confirmed | |||||
Visible | Gene | WBGene00237250 | ||||
Corresponding_transcript | OVOC441.1 | |||||
Corresponding_protein | OVP13703 | |||||
Matching_cDNA | ovolvulus_GG625|c53_g1_i5 | Inferred_automatically | transcript_builder.pl | |||
Brief_identification | Tubulin alpha chain-like 3 homolog | Person_evidence | WBPerson2973 | |||
RNASeq_FPKM | WBls:0000104 (15) | |||||
WBls:0000107 | 2.76973 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395 | |||
WBls:0000108 | 2.97251 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391 | |||
3.96301 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393 | ||||
4.13843 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392 | ||||
WBls:0000664 | 17.9089 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396 | |||
7.48577 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397 | ||||
Remark | [140403 es9] Splice sites of OVOC441 gene model corrected using RNA-Seq and protein evidence data. | Curator_confirmed | WBPerson2062 | |||
Method | curated |