WormBase Tree Display for CDS: OVOC452
expand all nodes | collapse all nodes | view schema
| OVOC452 | Evidence | Curator_confirmed | WBPerson2062 | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | OVOC_OM1b_7 | |||
| Structure | Source_exons (13) | |||||
| DB_info | DB_remark | contains similarity to Pfam domains PF00076 (RNA recognition motif), PF00641 (Zn-finger in Ran binding protein and others); contains similarity to Interpro domains IPR034870 (TAF15/EWS/TLS family), IPR001876 (Zinc finger, RanBP2-type), IPR035979 (RNA-binding domain superfamily), IPR036443 (Zinc finger, RanBP2-type superfamily), IPR012677 (Nucleotide-binding alpha-beta plait domain superfamily), IPR000504 (RNA recognition motif domain) | ||||
| Origin | From_laboratory | MBM | ||||
| Species | Onchocerca volvulus | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00237261 | ||||
| Corresponding_transcript | OVOC452.1 | |||||
| Corresponding_protein | OVP13060 | |||||
| RNASeq_FPKM | WBls:0000104 (15) | |||||
| WBls:0000107 | 94.2801 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395 | |||
| WBls:0000108 | 111.171 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391 | |||
| 123.792 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392 | ||||
| 140.834 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393 | ||||
| WBls:0000664 | 314.427 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397 | |||
| 59.245 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396 | ||||
| Remark | [140217 es9] Merged OVOC452 and OVOC453 based on RNA-Seq and Compara data. | Curator_confirmed | WBPerson2062 | |||
| Method | curated |
