WormBase Tree Display for CDS: OVOC456
expand all nodes | collapse all nodes | view schema
OVOC456 | SMap | S_parent | Sequence | OVOC_OM1b_7 | ||
---|---|---|---|---|---|---|
Structure | Source_exons (24) | |||||
DB_info | DB_remark | OVO-NATH-10 protein; contains similarity to Pfam domains PF05127 (Helicase), PF08351 (tRNA(Met) cytidine acetyltransferase TmcA, N-terminal), PF13718 (GNAT acetyltransferase 2), PF13725 (Possible tRNA binding domain); contains similarity to Interpro domains IPR013562 (tRNA(Met) cytidine acetyltransferase TmcA, N-terminal), IPR007807 (Helicase domain), IPR027992 (Possible tRNA binding domain), IPR000182 (GNAT domain), IPR016181 (Acyl-CoA N-acyltransferase), IPR032672 (TmcA/NAT10/Kre33) | ||||
Origin | From_laboratory | MGM | ||||
Species | Onchocerca volvulus | |||||
Properties | Coding | CDS | ||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00237265 | ||||
Corresponding_transcript | OVOC456.1 | |||||
Corresponding_protein | OVP10312 | |||||
Matching_cDNA | ovolvulus_GG625|c59_g1_i3 | Inferred_automatically | transcript_builder.pl | |||
Brief_identification | UPF0202 protein homolog | Person_evidence | WBPerson2973 | |||
RNASeq_FPKM | WBls:0000104 (15) | |||||
WBls:0000107 | 6.40242 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395 | |||
WBls:0000108 | 18.9647 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392 | |||
26.3554 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393 | ||||
4.96762 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391 | ||||
WBls:0000664 | 33.5406 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396 | |||
50.1358 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397 | ||||
Method | curated |