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WormBase Tree Display for CDS: OVOC464

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Name Class

OVOC464EvidenceCurator_confirmedWBPerson2062
SMapS_parentSequenceOVOC_OM1b_7
StructureSource_exons17
30233114
35443738
48535080
53195510
81348403
85068658
87978973
DB_infoDB_remarkcontains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor), PF00105 (Zinc finger, C4 type (two domains)); contains similarity to Interpro domains IPR001723 (Nuclear hormone receptor), IPR013088 (Zinc finger, NHR/GATA-type), IPR001728 (Thyroid hormone receptor), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding domain), IPR035500 (Nuclear hormone receptor-like domain superfamily)
OriginFrom_laboratoryMBM
SpeciesOnchocerca volvulus
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00237273
Corresponding_transcriptOVOC464.1
Corresponding_proteinOVP13314
Brief_identificationNuclear hormone receptor family member nhr-23 homologPerson_evidenceWBPerson2973
RNASeq_FPKMWBls:0000104 (12)
WBls:00001076.23989From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395
WBls:0000108150.645From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392
19.9375From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391
7.88176From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393
WBls:00006640.296384From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397
0.311451From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396
Remark[140217 es9] Merged OVOC464 and OVOC463 based on RNA-Seq and Compara data.Curator_confirmedWBPerson2062
Methodcurated