WormBase Tree Display for CDS: OVOC464
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OVOC464 | Evidence | Curator_confirmed | WBPerson2062 | |||
---|---|---|---|---|---|---|
SMap | S_parent | Sequence | OVOC_OM1b_7 | |||
Structure | Source_exons | 1 | 7 | |||
3023 | 3114 | |||||
3544 | 3738 | |||||
4853 | 5080 | |||||
5319 | 5510 | |||||
8134 | 8403 | |||||
8506 | 8658 | |||||
8797 | 8973 | |||||
DB_info | DB_remark | contains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor), PF00105 (Zinc finger, C4 type (two domains)); contains similarity to Interpro domains IPR001723 (Nuclear hormone receptor), IPR013088 (Zinc finger, NHR/GATA-type), IPR001728 (Thyroid hormone receptor), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding domain), IPR035500 (Nuclear hormone receptor-like domain superfamily) | ||||
Origin | From_laboratory | MBM | ||||
Species | Onchocerca volvulus | |||||
Properties | Coding | CDS | ||||
Prediction_status | Confirmed | |||||
Visible | Gene | WBGene00237273 | ||||
Corresponding_transcript | OVOC464.1 | |||||
Corresponding_protein | OVP13314 | |||||
Brief_identification | Nuclear hormone receptor family member nhr-23 homolog | Person_evidence | WBPerson2973 | |||
RNASeq_FPKM | WBls:0000104 (12) | |||||
WBls:0000107 | 6.23989 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395 | |||
WBls:0000108 | 150.645 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392 | |||
19.9375 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391 | ||||
7.88176 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393 | ||||
WBls:0000664 | 0.296384 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397 | |||
0.311451 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396 | ||||
Remark | [140217 es9] Merged OVOC464 and OVOC463 based on RNA-Seq and Compara data. | Curator_confirmed | WBPerson2062 | |||
Method | curated |