WormBase Tree Display for CDS: OVOC468
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OVOC468 | SMap | S_parent | Sequence | OVOC_OM1b_7 | ||
---|---|---|---|---|---|---|
Structure | Source_exons (22) | |||||
DB_info | DB_remark | OVO-SIN-3 protein; contains similarity to Pfam domains PF02671 (Paired amphipathic helix repeat), PF08295 (Sin3 family co-repressor), PF16879 (C-terminal domain of Sin3a protein); contains similarity to Interpro domains IPR013194 (Histone deacetylase interacting domain), IPR039774 (Transcriptional regulatory protein Sin3-like), IPR031693 (Sin3, C-terminal), IPR037969 (), IPR003822 (Paired amphipathic helix), IPR036600 (Paired amphipathic helix superfamily) | ||||
Origin | From_laboratory | MGM | ||||
Species | Onchocerca volvulus | |||||
Properties | Coding | CDS | ||||
Prediction_status | Confirmed | |||||
Visible | Gene | WBGene00237277 | ||||
Corresponding_transcript | OVOC468.1 | |||||
OVOC468.2 | ||||||
Corresponding_protein | OVP11666 | |||||
Matching_cDNA | ovolvulus_GG625|c44_g1_i1 | Inferred_automatically | transcript_builder.pl | |||
ovolvulus_GG625|c44_g1_i5 | Inferred_automatically | transcript_builder.pl | ||||
ovolvulus_GG625|c46_g3_i4 | Inferred_automatically | transcript_builder.pl | ||||
RNASeq_FPKM | WBls:0000104 (15) | |||||
WBls:0000107 | 7.25897 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395 | |||
WBls:0000108 | 29.03 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392 | |||
36.122 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393 | ||||
4.23255 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391 | ||||
WBls:0000664 | 33.8399 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396 | |||
35.7118 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397 | ||||
Method | curated |