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WormBase Tree Display for CDS: OVOC468

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Name Class

OVOC468SMapS_parentSequenceOVOC_OM1b_7
StructureSource_exons (22)
DB_infoDB_remarkOVO-SIN-3 protein; contains similarity to Pfam domains PF02671 (Paired amphipathic helix repeat), PF08295 (Sin3 family co-repressor), PF16879 (C-terminal domain of Sin3a protein); contains similarity to Interpro domains IPR013194 (Histone deacetylase interacting domain), IPR039774 (Transcriptional regulatory protein Sin3-like), IPR031693 (Sin3, C-terminal), IPR037969 (), IPR003822 (Paired amphipathic helix), IPR036600 (Paired amphipathic helix superfamily)
OriginFrom_laboratoryMGM
SpeciesOnchocerca volvulus
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00237277
Corresponding_transcriptOVOC468.1
OVOC468.2
Corresponding_proteinOVP11666
Matching_cDNAovolvulus_GG625|c44_g1_i1Inferred_automaticallytranscript_builder.pl
ovolvulus_GG625|c44_g1_i5Inferred_automaticallytranscript_builder.pl
ovolvulus_GG625|c46_g3_i4Inferred_automaticallytranscript_builder.pl
RNASeq_FPKMWBls:0000104 (15)
WBls:00001077.25897From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395
WBls:000010829.03From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392
36.122From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393
4.23255From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391
WBls:000066433.8399From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396
35.7118From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397
Methodcurated