WormBase Tree Display for CDS: OVOC483
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| OVOC483 | Evidence | Curator_confirmed | WBPerson2062 | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | OVOC_OM1b_7 | |||
| Structure | Source_exons (62) | |||||
| DB_info | DB_remark | contains similarity to Pfam domains PF06650 (Vacuolar-sorting associated protein 13, adaptor binding domain), PF12624 (VPS13-like, N-terminal), PF16908 (Vacuolar sorting-associated protein 13, extended-chorein), PF16909 (Vacuolar-sorting-associated 13 protein, DH-like domain), PF16910 (VPS13, central RBG modules); contains similarity to Interpro domains IPR026847 (Vacuolar protein sorting-associated protein 13), IPR031646 (Vacuolar protein sorting-associated protein 13, extended chorein), IPR031645 (Vacuolar protein sorting-associated protein 13, DH-like domain), IPR026854 (Vacuolar protein sorting-associated protein 13-like, N-terminal domain), IPR031642 (VPS13, middle RBG modules), IPR009543 (Vacuolar protein sorting-associated protein 13, VPS13 adaptor binding domain) | ||||
| Origin | From_laboratory | MBM | ||||
| Species | Onchocerca volvulus | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00237292 | ||||
| Corresponding_transcript | OVOC483.1 | |||||
| Corresponding_protein | OVP13397 | |||||
| Matching_cDNA | ovolvulus_GG629|c219_g2_i12 | Inferred_automatically | transcript_builder.pl | |||
| ovolvulus_GG629|c219_g3_i3 | Inferred_automatically | transcript_builder.pl | ||||
| Brief_identification | Vacuolar protein sorting-associated protein 13C homolog | Person_evidence | WBPerson2973 | |||
| RNASeq_FPKM | WBls:0000104 (15) | |||||
| WBls:0000107 | 16.7656 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395 | |||
| WBls:0000108 | 14.827 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391 | |||
| 38.1246 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392 | ||||
| 64.5593 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393 | ||||
| WBls:0000664 | 22.6222 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397 | |||
| 27.3047 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396 | ||||
| Remark | [140312 es9] Splice sites of OVOC483 gene model corrected using RNA-Seq, protein evidence and SL1 data. | Curator_confirmed | WBPerson2062 | |||
| Method | curated |
