WormBase Tree Display for CDS: OVOC498
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OVOC498 | Evidence | Curator_confirmed | WBPerson2062 | |||
---|---|---|---|---|---|---|
SMap | S_parent | Sequence | OVOC_OM1b_7 | |||
Structure | Source_exons | 1 | 81 | |||
2817 | 2984 | |||||
5396 | 5792 | |||||
6013 | 6132 | |||||
6204 | 6407 | |||||
6515 | 6648 | |||||
7036 | 7539 | |||||
DB_info | DB_remark | OVO-HMBX-1 protein; contains similarity to Pfam domains PF00046 (Homeodomain), PF04814 (Hepatocyte nuclear factor 1 (HNF-1), N terminus); contains similarity to Interpro domains IPR040363 (Homeobox-containing protein 1), IPR006899 (Hepatocyte nuclear factor 1, N-terminal), IPR001356 (Homeobox domain), IPR010982 (Lambda repressor-like, DNA-binding domain superfamily), IPR009057 (Homeobox-like domain superfamily) | ||||
Origin | From_laboratory | MBM | ||||
Species | Onchocerca volvulus | |||||
Properties | Coding | CDS | ||||
Prediction_status | Confirmed | |||||
Visible | Gene | WBGene00237307 | ||||
Corresponding_transcript | OVOC498.1 | |||||
Corresponding_protein | OVP13449 | |||||
RNASeq_FPKM | WBls:0000104 (15) | |||||
WBls:0000107 | 15.5864 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395 | |||
WBls:0000108 | 54.5848 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391 | |||
83.3475 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393 | ||||
97.0407 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392 | ||||
WBls:0000664 | 0.548617 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397 | |||
0.600302 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396 | ||||
Remark | [140310 es9] Merged OVOC498 and OVOC499 based on RNA-Seq, SL1 and protein evidence data. | Curator_confirmed | WBPerson2062 | |||
Method | curated |