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WormBase Tree Display for CDS: OVOC498

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Name Class

OVOC498EvidenceCurator_confirmedWBPerson2062
SMapS_parentSequenceOVOC_OM1b_7
StructureSource_exons181
28172984
53965792
60136132
62046407
65156648
70367539
DB_infoDB_remarkOVO-HMBX-1 protein; contains similarity to Pfam domains PF00046 (Homeodomain), PF04814 (Hepatocyte nuclear factor 1 (HNF-1), N terminus); contains similarity to Interpro domains IPR040363 (Homeobox-containing protein 1), IPR006899 (Hepatocyte nuclear factor 1, N-terminal), IPR001356 (Homeobox domain), IPR010982 (Lambda repressor-like, DNA-binding domain superfamily), IPR009057 (Homeobox-like domain superfamily)
OriginFrom_laboratoryMBM
SpeciesOnchocerca volvulus
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00237307
Corresponding_transcriptOVOC498.1
Corresponding_proteinOVP13449
RNASeq_FPKMWBls:0000104 (15)
WBls:000010715.5864From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395
WBls:000010854.5848From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391
83.3475From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393
97.0407From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392
WBls:00006640.548617From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397
0.600302From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396
Remark[140310 es9] Merged OVOC498 and OVOC499 based on RNA-Seq, SL1 and protein evidence data.Curator_confirmedWBPerson2062
Methodcurated