WormBase Tree Display for CDS: OVOC503
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| OVOC503 | Evidence | Curator_confirmed | WBPerson2062 | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | OVOC_OM1b_7 | |||
| Structure | Source_exons (11) | |||||
| DB_info | DB_remark | OVO-SNX-27 protein; contains similarity to Pfam domains PF00595 (PDZ domain), PF00787 (PX domain), PF00788 (Ras association (RalGDS/AF-6) domain); contains similarity to Interpro domains IPR037831 (SNX17/27/31-like), IPR036871 (PX domain superfamily), IPR000159 (Ras-associating domain), IPR001478 (PDZ domain), IPR036034 (PDZ superfamily), IPR001683 (Phox homology) | ||||
| Origin | From_laboratory | MBM | ||||
| Species | Onchocerca volvulus | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00237312 | ||||
| Corresponding_transcript | OVOC503.1 | |||||
| OVOC503.2 | ||||||
| Corresponding_protein | OVP13094 | |||||
| Matching_cDNA | ovolvulus_GG629|c181_g3_i2 | Inferred_automatically | transcript_builder.pl | |||
| ovolvulus_GG629|c181_g3_i3 | Inferred_automatically | transcript_builder.pl | ||||
| ovolvulus_GG629|c181_g3_i4 | Inferred_automatically | transcript_builder.pl | ||||
| ovolvulus_GG629|c181_g3_i6 | Inferred_automatically | transcript_builder.pl | ||||
| Brief_identification | Sorting nexin-27 homolog | Person_evidence | WBPerson2973 | |||
| RNASeq_FPKM | WBls:0000104 (15) | |||||
| WBls:0000107 | 6.07053 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395 | |||
| WBls:0000108 | 12.2206 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391 | |||
| 21.2352 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392 | ||||
| 22.2327 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393 | ||||
| WBls:0000664 | 10.7845 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397 | |||
| 12.0521 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396 | ||||
| Remark | [140306 es9] Splice sites of OVOC503 gene model corrected using RNA-Seq and protein evidence data. | Curator_confirmed | WBPerson2062 | |||
| Method | curated |
