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WormBase Tree Display for CDS: OVOC533

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Name Class

OVOC533EvidenceCurator_confirmedWBPerson2062
SMapS_parentSequenceOVOC_OM1b_7
StructureSource_exons194
240387
644716
13191441
17271820
19452039
22322357
DB_infoDB_remarkOVO-RAB-5 protein; contains similarity to Pfam domain PF00071 (Ras family); contains similarity to Interpro domains IPR001806 (Small GTPase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR005225 (Small GTP-binding protein domain)
OriginFrom_laboratoryMBM
SpeciesOnchocerca volvulus
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00237342
Corresponding_transcriptOVOC533.1
Corresponding_proteinOVP14105
Matching_cDNAovolvulus_GG629|c215_g7_i1Inferred_automaticallytranscript_builder.pl
ovolvulus_GG629|c215_g7_i3Inferred_automaticallytranscript_builder.pl
Brief_identificationRas-related protein Rab-17 homologPerson_evidenceWBPerson2973
RNASeq_FPKMWBls:0000104 (15)
WBls:000010726.9147From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395
WBls:000010820.1659From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391
37.821From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392
40.7668From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393
WBls:000066443.5823From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397
50.2264From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396
Remark[140414 es9] Splice sites of OVOC533 gene model corrected using RNA-Seq and protein evidence data.Curator_confirmedWBPerson2062
Methodcurated