WormBase Tree Display for CDS: OVOC533
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OVOC533 | Evidence | Curator_confirmed | WBPerson2062 | |||
---|---|---|---|---|---|---|
SMap | S_parent | Sequence | OVOC_OM1b_7 | |||
Structure | Source_exons | 1 | 94 | |||
240 | 387 | |||||
644 | 716 | |||||
1319 | 1441 | |||||
1727 | 1820 | |||||
1945 | 2039 | |||||
2232 | 2357 | |||||
DB_info | DB_remark | OVO-RAB-5 protein; contains similarity to Pfam domain PF00071 (Ras family); contains similarity to Interpro domains IPR001806 (Small GTPase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR005225 (Small GTP-binding protein domain) | ||||
Origin | From_laboratory | MBM | ||||
Species | Onchocerca volvulus | |||||
Properties | Coding | CDS | ||||
Prediction_status | Confirmed | |||||
Visible | Gene | WBGene00237342 | ||||
Corresponding_transcript | OVOC533.1 | |||||
Corresponding_protein | OVP14105 | |||||
Matching_cDNA | ovolvulus_GG629|c215_g7_i1 | Inferred_automatically | transcript_builder.pl | |||
ovolvulus_GG629|c215_g7_i3 | Inferred_automatically | transcript_builder.pl | ||||
Brief_identification | Ras-related protein Rab-17 homolog | Person_evidence | WBPerson2973 | |||
RNASeq_FPKM | WBls:0000104 (15) | |||||
WBls:0000107 | 26.9147 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395 | |||
WBls:0000108 | 20.1659 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391 | |||
37.821 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392 | ||||
40.7668 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393 | ||||
WBls:0000664 | 43.5823 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397 | |||
50.2264 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396 | ||||
Remark | [140414 es9] Splice sites of OVOC533 gene model corrected using RNA-Seq and protein evidence data. | Curator_confirmed | WBPerson2062 | |||
Method | curated |