WormBase Tree Display for CDS: OVOC551
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OVOC551 | Evidence | Curator_confirmed | WBPerson2062 | |||
---|---|---|---|---|---|---|
SMap | S_parent | Sequence | OVOC_OM1b_7 | |||
Structure | Source_exons | 1 | 162 | |||
401 | 769 | |||||
943 | 1131 | |||||
1204 | 1383 | |||||
1470 | 1596 | |||||
1769 | 1959 | |||||
2148 | 2399 | |||||
DB_info | DB_remark | OVO-MEI-1 protein; contains similarity to Pfam domains PF00004 (ATPase family associated with various cellular activities (AAA)), PF09336 (Vps4 C terminal oligomerisation domain), PF17862 (AAA+ lid domain); contains similarity to Interpro domains IPR003959 (ATPase, AAA-type, core), IPR015415 (Spastin/Vps4, C-terminal), IPR041569 (AAA ATPase, AAA+ lid domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR003593 (AAA+ ATPase domain) | ||||
Origin | From_laboratory | MBM | ||||
Species | Onchocerca volvulus | |||||
Properties | Coding | CDS | ||||
Prediction_status | Confirmed | |||||
Visible | Gene | WBGene00237360 | ||||
Corresponding_transcript | OVOC551.1 | |||||
Corresponding_protein | OVP13007 | |||||
RNASeq_FPKM | WBls:0000104 (15) | |||||
WBls:0000107 | 32.8928 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395 | |||
WBls:0000108 | 22.6495 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391 | |||
30.2383 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392 | ||||
34.5275 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393 | ||||
WBls:0000664 | 35.0105 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396 | |||
36.3798 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397 | ||||
Remark | [140306 es9] Gene model OVOC551 has been split into this, OVOC13394 and OVOC13395 based on SL1, RNA-Seq and protein evidence data. | Curator_confirmed | WBPerson2062 | |||
Method | curated |