WormBase Tree Display for CDS: OVOC555
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OVOC555 | Evidence | Curator_confirmed | WBPerson2062 | |||
---|---|---|---|---|---|---|
SMap | S_parent | Sequence | OVOC_OM1b_7 | |||
Structure | Source_exons | 1 | 42 | |||
813 | 957 | |||||
1037 | 1211 | |||||
1513 | 1672 | |||||
DB_info | DB_remark | contains similarity to Pfam domain PF04032 (RNAse P Rpr2/Rpp21/SNM1 subunit domain); contains similarity to Interpro domain IPR007175 (Ribonuclease P subunit, Rpr2/Snm1/Rpp21) | ||||
Origin | From_laboratory | MBM | ||||
Species | Onchocerca volvulus | |||||
Properties | Coding | CDS | ||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00237364 | ||||
Corresponding_transcript | OVOC555.1 | |||||
Corresponding_protein | OVP13151 | |||||
Matching_cDNA | BF918276 | Inferred_automatically | transcript_builder.pl | |||
RNASeq_FPKM | WBls:0000104 (15) | |||||
WBls:0000107 | 15.7284 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395 | |||
WBls:0000108 | 15.9235 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391 | |||
16.6657 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393 | ||||
21.7042 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392 | ||||
WBls:0000664 | 19.1622 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396 | |||
29.7105 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397 | ||||
Remark | [140306 es9] Splice sites of OVOC555 gene model corrected using RNA-Seq, protein evidence, SL1 and mRNA data. | Curator_confirmed | WBPerson2062 | |||
Method | curated |