WormBase Tree Display for CDS: OVOC564
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OVOC564 | SMap | S_parent | Sequence | OVOC_OM1b_7 | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 97 | |||
495 | 627 | |||||
845 | 943 | |||||
1010 | 1139 | |||||
1508 | 1744 | |||||
1871 | 2050 | |||||
2144 | 2233 | |||||
2400 | 2513 | |||||
DB_info | DB_remark | OVO-IDHA-1 protein; contains similarity to Pfam domain PF00180 (Isocitrate/isopropylmalate dehydrogenase); contains similarity to Interpro domains IPR004434 (Isocitrate dehydrogenase NAD-dependent), IPR024084 (Isopropylmalate dehydrogenase-like domain) | ||||
Origin | From_laboratory | MGM | ||||
Species | Onchocerca volvulus | |||||
Properties | Coding | CDS | ||||
Prediction_status | Confirmed | |||||
Visible | Gene | WBGene00237373 | ||||
Corresponding_transcript | OVOC564.1 | |||||
Corresponding_protein | OVP05986 | |||||
Matching_cDNA | ovolvulus_GG629|c169_g3_i3 | Inferred_automatically | transcript_builder.pl | |||
Brief_identification | Putative isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial | Person_evidence | WBPerson2973 | |||
RNASeq_FPKM | WBls:0000104 (15) | |||||
WBls:0000107 | 25.6049 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395 | |||
WBls:0000108 | 14.8763 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393 | |||
19.1527 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392 | ||||
25.2476 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391 | ||||
WBls:0000664 | 18.5989 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397 | |||
32.2203 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396 | ||||
Method | curated |