WormBase Tree Display for CDS: OVOC5748
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OVOC5748 | Evidence | Curator_confirmed | WBPerson2062 | |||
---|---|---|---|---|---|---|
SMap | S_parent | Sequence | OVOC_OM2_79 | |||
Structure | Source_exons | 1 | 30 | |||
302 | 418 | |||||
574 | 685 | |||||
1028 | 1102 | |||||
5475 | 5560 | |||||
5711 | 5819 | |||||
6021 | 6094 | |||||
6228 | 6365 | |||||
6464 | 6574 | |||||
6705 | 6806 | |||||
DB_info | DB_remark | contains similarity to Pfam domains PF00804 (Syntaxin), PF05739 (SNARE domain); contains similarity to Interpro domains IPR000727 (Target SNARE coiled-coil homology domain), IPR010989 (SNARE), IPR006011 (Syntaxin, N-terminal domain) | ||||
Origin | From_laboratory | MBM | ||||
Species | Onchocerca volvulus | |||||
Properties | Coding | CDS | ||||
Prediction_status | Confirmed | |||||
Visible | Gene | WBGene00242557 | ||||
Corresponding_transcript | OVOC5748.1 | |||||
Corresponding_protein | OVP14563 | |||||
RNASeq_FPKM | WBls:0000104 (15) | |||||
WBls:0000107 | 36.6029 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395 | |||
WBls:0000108 | 11.7754 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391 | |||
25.8442 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392 | ||||
30.0888 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393 | ||||
WBls:0000664 | 33.0419 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396 | |||
38.5343 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397 | ||||
Remark | [140508 es9] Merged OVOC5748 and OVOC5750 based on RNA-Seq and protein evidence data. | Curator_confirmed | WBPerson2062 | |||
Method | curated |