WormBase Tree Display for CDS: OVOC589
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| OVOC589 | Evidence | Curator_confirmed | WBPerson2062 | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | OVOC_OM1b_7 | |||
| Structure | Source_exons (14) | |||||
| DB_info | DB_remark | contains similarity to Pfam domains PF00224 (Pyruvate kinase, barrel domain), PF02887 (Pyruvate kinase, alpha/beta domain); contains similarity to Interpro domains IPR015806 (Pyruvate kinase, insert domain superfamily), IPR040442 (Pyruvate kinase-like domain superfamily), IPR015795 (Pyruvate kinase, C-terminal), IPR001697 (Pyruvate kinase), IPR015813 (Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily), IPR011037 (Pyruvate kinase-like, insert domain superfamily), IPR036918 (Pyruvate kinase, C-terminal domain superfamily), IPR015793 (Pyruvate kinase, barrel) | ||||
| Origin | From_laboratory | MBM | ||||
| Species | Onchocerca volvulus | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00237398 | ||||
| Corresponding_transcript | OVOC589.1 | |||||
| Corresponding_protein | OVP13368 | |||||
| Matching_cDNA | AI363624 | Inferred_automatically | transcript_builder.pl | |||
| ovolvulus_GG629|c204_g2_i4 | Inferred_automatically | transcript_builder.pl | ||||
| Brief_identification | Pyruvate kinase homolog | Person_evidence | WBPerson2973 | |||
| RNASeq_FPKM | WBls:0000104 (15) | |||||
| WBls:0000107 | 375.672 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395 | |||
| WBls:0000108 | 426.491 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392 | |||
| 435.288 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393 | ||||
| 578.706 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391 | ||||
| WBls:0000664 | 402.863 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397 | |||
| 464.007 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396 | ||||
| Remark | [140307 es9] Splice sites of OVOC589 gene model corrected using RNA-Seq, protein evidence, SL1 and mRNA data. | Curator_confirmed | WBPerson2062 | |||
| Method | curated |
