WormBase Tree Display for CDS: OVOC595
expand all nodes | collapse all nodes | view schema
OVOC595 | SMap | S_parent | Sequence | OVOC_OM1b_7 | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 111 | |||
332 | 376 | |||||
645 | 754 | |||||
1033 | 1198 | |||||
1444 | 1592 | |||||
2154 | 2248 | |||||
2418 | 2653 | |||||
3139 | 3302 | |||||
3471 | 3633 | |||||
3969 | 4154 | |||||
DB_info | DB_remark | contains similarity to Pfam domains PF02931 (Neurotransmitter-gated ion-channel ligand binding domain), PF02932 (Neurotransmitter-gated ion-channel transmembrane region); contains similarity to Interpro domains IPR036734 (Neurotransmitter-gated ion-channel ligand-binding domain superfamily), IPR006202 (Neurotransmitter-gated ion-channel ligand-binding domain), IPR036719 (Neurotransmitter-gated ion-channel transmembrane domain superfamily), IPR002394 (Nicotinic acetylcholine receptor), IPR006201 (Neurotransmitter-gated ion-channel), IPR006029 (Neurotransmitter-gated ion-channel transmembrane domain) | ||||
Origin | From_laboratory | MGM | ||||
Species | Onchocerca volvulus | |||||
Properties | Coding | CDS | ||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00237404 | ||||
Corresponding_transcript | OVOC595.1 | |||||
Corresponding_protein | OVP00999 | |||||
Brief_identification | Acetylcholine receptor subunit beta-type homolog | Person_evidence | WBPerson2973 | |||
RNASeq_FPKM | WBls:0000104 (15) | |||||
WBls:0000107 | 11.6168 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395 | |||
WBls:0000108 | 3.76291 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391 | |||
6.15274 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392 | ||||
6.35316 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393 | ||||
WBls:0000664 | 4.65571 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396 | |||
8.10279 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397 | ||||
Method | curated |