WormBase Tree Display for CDS: OVOC598
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OVOC598 | Evidence | Curator_confirmed | WBPerson2062 | |||
---|---|---|---|---|---|---|
SMap | S_parent | Sequence | OVOC_OM1b_7 | |||
Structure | Source_exons | 1 | 171 | |||
990 | 1047 | |||||
1232 | 1319 | |||||
1482 | 1600 | |||||
2371 | 2553 | |||||
2733 | 2821 | |||||
3074 | 3205 | |||||
3556 | 3684 | |||||
4055 | 4174 | |||||
DB_info | DB_remark | OVO-PGHM-1 protein; contains similarity to Pfam domains PF01082 (Copper type II ascorbate-dependent monooxygenase, N-terminal domain), PF03712 (Copper type II ascorbate-dependent monooxygenase, C-terminal domain); contains similarity to Interpro domains IPR008977 (PHM/PNGase F domain superfamily), IPR000323 (Copper type II, ascorbate-dependent monooxygenase, N-terminal), IPR024548 (Copper type II ascorbate-dependent monooxygenase, C-terminal), IPR014784 (Copper type II, ascorbate-dependent monooxygenase-like, C-terminal), IPR000720 (Peptidylglycine alpha-hydroxylating monooxygenase/peptidyl-hydroxyglycine alpha-amidating lyase), IPR036939 (Copper type II, ascorbate-dependent monooxygenase, N-terminal domain superfamily) | ||||
Origin | From_laboratory | MGM | ||||
Species | Onchocerca volvulus | |||||
Properties | Coding | CDS | ||||
Prediction_status | Partially_confirmed | |||||
Start_not_found | 1 | |||||
Visible | Gene | WBGene00237407 | ||||
Corresponding_transcript | OVOC598.1 | |||||
Corresponding_protein | OVP06629 | |||||
Matching_cDNA | AA624961 | Inferred_automatically | transcript_builder.pl | |||
AA629449 | Inferred_automatically | transcript_builder.pl | ||||
AI124424 | Inferred_automatically | transcript_builder.pl | ||||
AI132829 | Inferred_automatically | transcript_builder.pl | ||||
AW313107 | Inferred_automatically | transcript_builder.pl | ||||
Brief_identification | Putative peptidylglycine alpha-hydroxylating monooxygenase | Person_evidence | WBPerson2973 | |||
RNASeq_FPKM | WBls:0000104 (15) | |||||
WBls:0000107 | 235.239 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395 | |||
WBls:0000108 | 138.017 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391 | |||
222.045 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392 | ||||
286.408 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393 | ||||
WBls:0000664 | 446.11 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397 | |||
512.164 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396 | ||||
Method | curated |