WormBase Tree Display for CDS: OVOC599
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OVOC599 | Evidence | Curator_confirmed | WBPerson2062 | |||
---|---|---|---|---|---|---|
SMap | S_parent | Sequence | OVOC_OM1b_7 | |||
Structure | Source_exons | 1 | 89 | |||
658 | 755 | |||||
958 | 1031 | |||||
1263 | 1517 | |||||
1607 | 1723 | |||||
1931 | 2050 | |||||
2380 | 2490 | |||||
2958 | 3026 | |||||
DB_info | DB_remark | contains similarity to Pfam domain PF16019 (Cysteine/serine-rich nuclear protein N-terminus); contains similarity to Interpro domains IPR031972 (Cysteine/serine-rich nuclear protein, N-terminal domain), IPR023260 (Cysteine/serine-rich nuclear protein family) | ||||
Origin | From_laboratory | MBM | ||||
Species | Onchocerca volvulus | |||||
Properties | Coding | CDS | ||||
Prediction_status | Confirmed | |||||
Visible | Gene | WBGene00237408 | ||||
Corresponding_transcript | OVOC599.1 | |||||
OVOC599.2 | ||||||
Corresponding_protein | OVP13370 | |||||
Matching_cDNA | ovolvulus_GG629|c190_g2_i3 | Inferred_automatically | transcript_builder.pl | |||
ovolvulus_GG629|c190_g2_i6 | Inferred_automatically | transcript_builder.pl | ||||
RNASeq_FPKM | WBls:0000104 (15) | |||||
WBls:0000107 | 27.6291 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395 | |||
WBls:0000108 | 22.9598 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391 | |||
33.5275 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392 | ||||
41.1584 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393 | ||||
WBls:0000664 | 33.1712 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397 | |||
45.1403 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396 | ||||
Remark | [140310 es9] Splice sites of OVOC599 gene model corrected using RNA-Seq, protein evidence and SL1 data. | Curator_confirmed | WBPerson2062 | |||
Method | curated |