WormBase Tree Display for CDS: OVOC631
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| OVOC631 | SMap | S_parent | Sequence | OVOC_OM1b_7 | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons | 1 | 76 | |||
| 492 | 543 | |||||
| 924 | 1013 | |||||
| 2439 | 2635 | |||||
| 2986 | 3052 | |||||
| 3499 | 3650 | |||||
| 3892 | 3996 | |||||
| 4149 | 4279 | |||||
| DB_info | DB_remark | OVO-ZTF-4 protein; contains similarity to Pfam domain PF00076 (RNA recognition motif); contains similarity to Interpro domains IPR035979 (RNA-binding domain superfamily), IPR012677 (Nucleotide-binding alpha-beta plait domain superfamily), IPR013087 (Zinc finger C2H2-type), IPR000504 (RNA recognition motif domain) | ||||
| Origin | From_laboratory | MGM | ||||
| Species | Onchocerca volvulus | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00237440 | ||||
| Corresponding_transcript | OVOC631.1 | |||||
| Corresponding_protein | OVP01260 | |||||
| Matching_cDNA | ovolvulus_GG619|c35_g4_i4 | Inferred_automatically | transcript_builder.pl | |||
| RNASeq_FPKM | WBls:0000104 (15) | |||||
| WBls:0000107 | 62.9282 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395 | |||
| WBls:0000108 | 53.4251 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391 | |||
| 74.8381 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393 | ||||
| 77.4176 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392 | ||||
| WBls:0000664 | 143.648 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397 | |||
| 97.8236 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396 | ||||
| Method | curated |
