WormBase Tree Display for CDS: OVOC678
expand all nodes | collapse all nodes | view schema
| OVOC678 | Evidence | Curator_confirmed | WBPerson2062 | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | OVOC_OM1b_7 | |||
| Structure | Source_exons | 1 | 63 | |||
| 193 | 379 | |||||
| 936 | 1246 | |||||
| DB_info | DB_remark | contains similarity to Pfam domains PF00017 (SH2 domain), PF07525 (SOCS box); contains similarity to Interpro domains IPR036860 (SH2 domain superfamily), IPR001496 (SOCS box domain), IPR036036 (SOCS box-like domain superfamily), IPR000980 (SH2 domain) | ||||
| Origin | From_laboratory | MBM | ||||
| Species | Onchocerca volvulus | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00237487 | ||||
| Corresponding_transcript | OVOC678.1 | |||||
| Corresponding_protein | OVP14267 | |||||
| Brief_identification | Suppressor of cytokine signaling 7 homolog | Person_evidence | WBPerson2973 | |||
| RNASeq_FPKM | WBls:0000104 (15) | |||||
| WBls:0000107 | 103.71 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395 | |||
| WBls:0000108 | 242.262 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391 | |||
| 260.692 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392 | ||||
| 288.126 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393 | ||||
| WBls:0000664 | 64.4351 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396 | |||
| 73.1904 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397 | ||||
| Remark | [140414 es9] Splice sites of OVOC678 gene model corrected using RNA-Seq and protein evidence data. | Curator_confirmed | WBPerson2062 | |||
| Method | curated |
