WormBase Tree Display for CDS: OVOC682
expand all nodes | collapse all nodes | view schema
OVOC682 | SMap | S_parent | Sequence | OVOC_OM1b_7 | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 83 | |||
155 | 419 | |||||
588 | 764 | |||||
1187 | 1371 | |||||
1699 | 1954 | |||||
2083 | 2217 | |||||
2518 | 2685 | |||||
2909 | 3055 | |||||
DB_info | DB_remark | OVO-AHA-1 protein; contains similarity to Pfam domains PF00010 (Helix-loop-helix DNA-binding domain), PF14598 (PAS domain); contains similarity to Interpro domains IPR000014 (PAS domain), IPR036638 (Helix-loop-helix DNA-binding domain superfamily), IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain), IPR001067 (Nuclear translocator), IPR035965 (PAS domain superfamily) | ||||
Origin | From_laboratory | MGM | ||||
Species | Onchocerca volvulus | |||||
Properties | Coding | CDS | ||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00237491 | ||||
Corresponding_transcript | OVOC682.1 | |||||
Corresponding_protein | OVP06745 | |||||
Matching_cDNA | ovolvulus_GG648|c114_g3_i6 | Inferred_automatically | transcript_builder.pl | |||
Brief_identification | Aryl hydrocarbon receptor nuclear translocator homolog | Person_evidence | WBPerson2973 | |||
RNASeq_FPKM | WBls:0000104 (15) | |||||
WBls:0000107 | 42.2459 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395 | |||
WBls:0000108 | 30.2131 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391 | |||
53.8986 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393 | ||||
58.7452 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392 | ||||
WBls:0000664 | 33.1045 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396 | |||
35.6812 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397 | ||||
Method | curated |