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WormBase Tree Display for CDS: OVOC682

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Name Class

OVOC682SMapS_parentSequenceOVOC_OM1b_7
StructureSource_exons183
155419
588764
11871371
16991954
20832217
25182685
29093055
DB_infoDB_remarkOVO-AHA-1 protein; contains similarity to Pfam domains PF00010 (Helix-loop-helix DNA-binding domain), PF14598 (PAS domain); contains similarity to Interpro domains IPR000014 (PAS domain), IPR036638 (Helix-loop-helix DNA-binding domain superfamily), IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain), IPR001067 (Nuclear translocator), IPR035965 (PAS domain superfamily)
OriginFrom_laboratoryMGM
SpeciesOnchocerca volvulus
PropertiesCodingCDS
Prediction_statusPartially_confirmed
VisibleGeneWBGene00237491
Corresponding_transcriptOVOC682.1
Corresponding_proteinOVP06745
Matching_cDNAovolvulus_GG648|c114_g3_i6Inferred_automaticallytranscript_builder.pl
Brief_identificationAryl hydrocarbon receptor nuclear translocator homologPerson_evidenceWBPerson2973
RNASeq_FPKMWBls:0000104 (15)
WBls:000010742.2459From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395
WBls:000010830.2131From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391
53.8986From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393
58.7452From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392
WBls:000066433.1045From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396
35.6812From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397
Methodcurated