WormBase Tree Display for CDS: OVOC687
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| OVOC687 | SMap | S_parent | Sequence | OVOC_OM1b_7 | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons | 1 | 42 | |||
| 220 | 376 | |||||
| 692 | 780 | |||||
| 867 | 976 | |||||
| 1055 | 1199 | |||||
| 1304 | 1430 | |||||
| 1566 | 1780 | |||||
| 1918 | 2077 | |||||
| 2189 | 2313 | |||||
| 2406 | 2504 | |||||
| DB_info | DB_remark | OVO-APM-1 protein; contains similarity to Pfam domains PF00928 (Adaptor complexes medium subunit family), PF01217 (Clathrin adaptor complex small chain); contains similarity to Interpro domains IPR022775 (AP complex, mu/sigma subunit), IPR028565 (Mu homology domain), IPR036168 (AP-2 complex subunit mu, C-terminal superfamily), IPR011012 (Longin-like domain superfamily), IPR001392 (Clathrin adaptor, mu subunit) | ||||
| Origin | From_laboratory | MGM | ||||
| Species | Onchocerca volvulus | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00237496 | ||||
| Corresponding_transcript | OVOC687.1 | |||||
| OVOC687.2 | ||||||
| Corresponding_protein | OVP09024 | |||||
| Matching_cDNA | ovolvulus_GG648|c152_g1_i3 | Inferred_automatically | transcript_builder.pl | |||
| ovolvulus_GG648|c152_g1_i11 | Inferred_automatically | transcript_builder.pl | ||||
| ovolvulus_GG648|c152_g1_i17 | Inferred_automatically | transcript_builder.pl | ||||
| ovolvulus_GG648|c152_g1_i19 | Inferred_automatically | transcript_builder.pl | ||||
| ovolvulus_GG648|c152_g1_i23 | Inferred_automatically | transcript_builder.pl | ||||
| ovolvulus_GG648|c152_g1_i25 | Inferred_automatically | transcript_builder.pl | ||||
| RNASeq_FPKM | WBls:0000104 (15) | |||||
| WBls:0000107 | 13.9194 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395 | |||
| WBls:0000108 | 21.4651 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392 | |||
| 21.4984 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393 | ||||
| 22.0206 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391 | ||||
| WBls:0000664 | 10.2123 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396 | |||
| 8.07379 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397 | ||||
| Method | curated |
