WormBase Tree Display for CDS: OVOC744
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| OVOC744 | SMap | S_parent | Sequence | OVOC_OM1b_7 | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (11) | |||||
| DB_info | DB_remark | OVO-NOL-5 protein; contains similarity to Pfam domains PF01798 (snoRNA binding domain, fibrillarin), PF08156 (NOP5NT (NUC127) domain); contains similarity to Interpro domains IPR036070 (Nop domain superfamily), IPR029012 (Helix hairpin bin domain superfamily), IPR012976 (NOSIC), IPR012974 (Nucleolar protein 58/56, N-terminal), IPR042239 (Nop, C-terminal domain), IPR002687 (Nop domain) | ||||
| Origin | From_laboratory | MGM | ||||
| Species | Onchocerca volvulus | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00237553 | ||||
| Corresponding_transcript | OVOC744.1 | |||||
| Corresponding_protein | OVP00473 | |||||
| Matching_cDNA | BE720971 | Inferred_automatically | transcript_builder.pl | |||
| ovolvulus_GG648|c148_g8_i7 | Inferred_automatically | transcript_builder.pl | ||||
| ovolvulus_GG648|c148_g8_i9 | Inferred_automatically | transcript_builder.pl | ||||
| RNASeq_FPKM | WBls:0000104 (15) | |||||
| WBls:0000107 | 14.7447 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395 | |||
| WBls:0000108 | 25.5593 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392 | |||
| 27.7182 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393 | ||||
| 4.91524 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391 | ||||
| WBls:0000664 | 116.584 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397 | |||
| 84.2127 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396 | ||||
| Method | curated |
