WormBase Tree Display for CDS: OVOC7494
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| OVOC7494 | SMap | S_parent | Sequence | OVOC_OM2_177 | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons | 1 | 174 | |||
| 2962 | 2971 | |||||
| 3127 | 3227 | |||||
| 3461 | 3540 | |||||
| 3734 | 3860 | |||||
| 3939 | 4115 | |||||
| 4341 | 4431 | |||||
| 4687 | 4778 | |||||
| 5168 | 5269 | |||||
| 5761 | 5961 | |||||
| DB_info | DB_remark | OVO-SYX-5 protein; contains similarity to Pfam domains PF05739 (SNARE domain), PF11416 (Syntaxin-5 N-terminal, Sly1p-binding domain); contains similarity to Interpro domains IPR000727 (Target SNARE coiled-coil homology domain), IPR010989 (SNARE), IPR021538 (Syntaxin-5, N-terminal, Sly1p-binding domain) | ||||
| Origin | From_laboratory | MGM | ||||
| Species | Onchocerca volvulus | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00244303 | ||||
| Corresponding_transcript | OVOC7494.1 | |||||
| Corresponding_protein | OVP01863 | |||||
| Brief_identification | Putative syntaxin-5 | Person_evidence | WBPerson2973 | |||
| RNASeq_FPKM | WBls:0000104 (15) | |||||
| WBls:0000107 | 8.51013 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395 | |||
| WBls:0000108 | 10.4571 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391 | |||
| 32.0624 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392 | ||||
| 37.9351 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393 | ||||
| WBls:0000664 | 15.2497 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397 | |||
| 17.3009 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396 | ||||
| Method | curated |
