WormBase Tree Display for CDS: OVOC8962
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| OVOC8962 | SMap | S_parent | Sequence | OVOC_OM3_79 | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (16) | |||||
| DB_info | DB_remark | OVO-GARS-1 protein; contains similarity to Pfam domains PF00458 (WHEP-TRS domain), PF00587 (tRNA synthetase class II core domain (G, H, P, S and T)), PF03129 (Anticodon binding domain); contains similarity to Interpro domains IPR000738 (WHEP-TRS domain), IPR002315 (Glycyl-tRNA synthetase), IPR027031 (Glycyl-tRNA synthetase/DNA polymerase subunit gamma-2), IPR036621 (Anticodon-binding domain superfamily), IPR002314 (Aminoacyl-tRNA synthetase, class II (G/ P/ S/T)), IPR004154 (Anticodon-binding) | ||||
| Origin | From_laboratory | MGM | ||||
| Species | Onchocerca volvulus | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00245771 | ||||
| Corresponding_transcript | OVOC8962.1 | |||||
| Corresponding_protein | OVP00289 | |||||
| Brief_identification | Glycine--tRNA ligase homolog | Person_evidence | WBPerson2973 | |||
| RNASeq_FPKM | WBls:0000104 (15) | |||||
| WBls:0000107 | 11.3096 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395 | |||
| WBls:0000108 | 33.4448 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392 | |||
| 33.7117 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393 | ||||
| 9.31911 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391 | ||||
| WBls:0000664 | 38.0346 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396 | |||
| 69.8548 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397 | ||||
| Method | curated |
