WormBase Tree Display for CDS: OVOC9945
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| OVOC9945 | SMap | S_parent | Sequence | OVOC_OM4_33 | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons | 1 | 180 | |||
| 320 | 418 | |||||
| 548 | 860 | |||||
| 935 | 1135 | |||||
| 1213 | 1311 | |||||
| 1515 | 1615 | |||||
| DB_info | DB_remark | OVO-DPY-10 protein; contains similarity to Pfam domains PF01391 (Collagen triple helix repeat (20 copies)), PF01484 (Nematode cuticle collagen N-terminal domain); contains similarity to Interpro domains IPR002486 (Nematode cuticle collagen, N-terminal), IPR008160 (Collagen triple helix repeat) | ||||
| Origin | From_laboratory | MGM | ||||
| Species | Onchocerca volvulus | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00246754 | ||||
| Corresponding_transcript | OVOC9945.1 | |||||
| OVOC9945.2 | ||||||
| Corresponding_protein | OVP05017 | |||||
| Matching_cDNA | ovolvulus_GG1057|c59_g1_i2 | Inferred_automatically | transcript_builder.pl | |||
| ovolvulus_GG1057|c59_g1_i3 | Inferred_automatically | transcript_builder.pl | ||||
| ovolvulus_GG1057|c59_g1_i5 | Inferred_automatically | transcript_builder.pl | ||||
| ovolvulus_GG1057|c59_g1_i6 | Inferred_automatically | transcript_builder.pl | ||||
| ovolvulus_GG1057|c59_g1_i7 | Inferred_automatically | transcript_builder.pl | ||||
| ovolvulus_GG1057|c59_g1_i8 | Inferred_automatically | transcript_builder.pl | ||||
| ovolvulus_GG1057|c59_g1_i9 | Inferred_automatically | transcript_builder.pl | ||||
| Brief_identification | Cuticle collagen dpy-10 homolog | Person_evidence | WBPerson2973 | |||
| RNASeq_FPKM | WBls:0000104 (15) | |||||
| WBls:0000107 | 2.08654 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395 | |||
| WBls:0000108 | 0.886987 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391 | |||
| 1.23113 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393 | ||||
| 26.0186 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392 | ||||
| WBls:0000664 | 0.016984 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397 | |||
| 0.022714 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396 | ||||
| Method | curated |
