WormBase Tree Display for CDS: PPA00007
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PPA00007 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 139 | |||
205 | 266 | |||||
325 | 441 | |||||
968 | 1084 | |||||
1145 | 1201 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S57-18.8 | ||
DB_remark | contains similarity to Interpro domains IPR040094 (Fatty acid-binding protein homologue 1/2/3/4), IPR012674 (Calycin), IPR000463 (Cytosolic fatty-acid binding) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Confirmed | |||||
Visible | Gene | WBGene00089561 | ||||
Corresponding_transcript | PPA00007.1 | |||||
Corresponding_protein | PP68209 | |||||
Corresponding_oligo_set | GPL14372_Probes_54784 | |||||
GPL14372_Probes_54785 | ||||||
GPL14372_Probes_54786 | ||||||
Matching_cDNA | EB182481 | Inferred_automatically | transcript_builder.pl | |||
EB183758 | Inferred_automatically | transcript_builder.pl | ||||
EB183930 | Inferred_automatically | transcript_builder.pl | ||||
FE940631 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results | GPL14372_Probes_54784 | |||||
GPL14372_Probes_54785 | ||||||
GPL14372_Probes_54786 | ||||||
RNASeq_FPKM | WBls:0000032 | 289.293 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 331.453 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S57-18.8 | Curator_confirmed | WBPerson4055 | |||
Method | curated |