WormBase Tree Display for CDS: PPA00010
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PPA00010 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (15) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S57-18.21 | ||
DB_remark | contains similarity to Pfam domain PF00505 (HMG (high mobility group) box); contains similarity to Interpro domains IPR036910 (High mobility group box domain superfamily), IPR009071 (High mobility group box domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00089564 | ||||
Corresponding_transcript | PPA00010.1 | |||||
Corresponding_protein | PP51399 | |||||
Corresponding_oligo_set | GPL14372_Probes_54801 | |||||
GPL14372_Probes_54802 | ||||||
GPL14372_Probes_54803 | ||||||
Microarray_results | GPL14372_Probes_54801 | |||||
GPL14372_Probes_54802 | ||||||
GPL14372_Probes_54803 | ||||||
RNASeq_FPKM | WBls:0000032 | 11.1108 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 10.4978 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S57-18.21 | Curator_confirmed | WBPerson4055 | |||
Method | curated |