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WormBase Tree Display for CDS: PPA00013

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Name Class

PPA00013SMapS_parentSequencePPA_ChrI
StructureSource_exons1109
154270
21102204
DB_infoDatabasepristionchus.orgcdsgene-UMM-S57-18.12
TREEFAMTREEFAM_IDTF314385
DB_remarkPPA-LSM-7 protein; contains similarity to Pfam domain PF01423 (LSM domain); contains similarity to Interpro domains IPR001163 (Sm domain, eukaryotic/archaea-type), IPR010920 (LSM domain superfamily)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPartially_confirmed
VisibleGeneWBGene00089567
Corresponding_transcriptPPA00013.1
Corresponding_proteinPP25010
Corresponding_oligo_setGPL14372_Probes_9264
GPL14372_Probes_9266
Matching_cDNAFG100971Inferred_automaticallytranscript_builder.pl
FE932997Inferred_automaticallytranscript_builder.pl
FG101045Inferred_automaticallytranscript_builder.pl
FG095916Inferred_automaticallytranscript_builder.pl
FG101336Inferred_automaticallytranscript_builder.pl
FG097534Inferred_automaticallytranscript_builder.pl
FG098461Inferred_automaticallytranscript_builder.pl
FG100180Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14372_Probes_9264
GPL14372_Probes_9266
RNASeq_FPKMWBls:0000032300.543From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:0000101322.924From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Remark[171116 mh6] renamed from gene-UMM-S57-18.12Curator_confirmedWBPerson4055
Methodcurated