WormBase Tree Display for CDS: PPA00013
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PPA00013 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 109 | |||
154 | 270 | |||||
2110 | 2204 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S57-18.12 | ||
TREEFAM | TREEFAM_ID | TF314385 | ||||
DB_remark | PPA-LSM-7 protein; contains similarity to Pfam domain PF01423 (LSM domain); contains similarity to Interpro domains IPR001163 (Sm domain, eukaryotic/archaea-type), IPR010920 (LSM domain superfamily) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00089567 | ||||
Corresponding_transcript | PPA00013.1 | |||||
Corresponding_protein | PP25010 | |||||
Corresponding_oligo_set | GPL14372_Probes_9264 | |||||
GPL14372_Probes_9266 | ||||||
Matching_cDNA | FG100971 | Inferred_automatically | transcript_builder.pl | |||
FE932997 | Inferred_automatically | transcript_builder.pl | ||||
FG101045 | Inferred_automatically | transcript_builder.pl | ||||
FG095916 | Inferred_automatically | transcript_builder.pl | ||||
FG101336 | Inferred_automatically | transcript_builder.pl | ||||
FG097534 | Inferred_automatically | transcript_builder.pl | ||||
FG098461 | Inferred_automatically | transcript_builder.pl | ||||
FG100180 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results | GPL14372_Probes_9264 | |||||
GPL14372_Probes_9266 | ||||||
RNASeq_FPKM | WBls:0000032 | 300.543 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 322.924 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S57-18.12 | Curator_confirmed | WBPerson4055 | |||
Method | curated |