WormBase Tree Display for CDS: PPA00045
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| PPA00045 | Evidence | Curator_confirmed | WBPerson4055 | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | PPA_ChrI | |||
| Structure | Source_exons | 1 | 48 | |||
| 136 | 237 | |||||
| 388 | 463 | |||||
| 612 | 728 | |||||
| 851 | 921 | |||||
| 1328 | 1457 | |||||
| 1624 | 1703 | |||||
| 2014 | 2073 | |||||
| 2429 | 2584 | |||||
| 3230 | 3247 | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S139-19.30 | ||
| DB_remark | PPA-PAS-6 protein; contains similarity to Pfam domains PF00227 (Proteasome subunit), PF10584 (Proteasome subunit A N-terminal signature); contains similarity to Interpro domains IPR035144 (Proteasome subunit alpha 1), IPR001353 (Proteasome, subunit alpha/beta), IPR029055 (Nucleophile aminohydrolases, N-terminal), IPR000426 (Proteasome alpha-subunit, N-terminal domain) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00089599 | ||||
| Corresponding_transcript | PPA00045.1 | |||||
| Corresponding_protein | PP75504 | |||||
| Corresponding_oligo_set | GPL14372_Probes_54728 | |||||
| GPL14372_Probes_54729 | ||||||
| GPL14372_Probes_54730 | ||||||
| GPL14372_Probes_54731 | ||||||
| Matching_cDNA | FG096533 | Inferred_automatically | transcript_builder.pl | |||
| AW097083 | Inferred_automatically | transcript_builder.pl | ||||
| FG098836 | Inferred_automatically | transcript_builder.pl | ||||
| Microarray_results | GPL14372_Probes_54728 | |||||
| GPL14372_Probes_54729 | ||||||
| GPL14372_Probes_54730 | ||||||
| GPL14372_Probes_54731 | ||||||
| RNASeq_FPKM | WBls:0000032 | 9.81055 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Last_reviewed | 08 Nov 2019 11:03:40 | WBPerson4055 | ||||
| Remark | [171116 mh6] renamed from gene-UMM-S139-19.30 | Curator_confirmed | WBPerson4055 | |||
| [191108 mh6] This gene has been split based on the RNASeq data. | Curator_confirmed | WBPerson4055 | ||||
| From_analysis | RNASeq | |||||
| Method | curated |
