WormBase Tree Display for CDS: PPA00054
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| PPA00054 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (58) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S57-20.36 | ||
| TREEFAM | TREEFAM_ID | TF314297 | ||||
| DB_remark | contains similarity to Pfam domains PF00209 (Sodium:neurotransmitter symporter family), PF00753 (Metallo-beta-lactamase superfamily), PF18102 (Deltex C-terminal domain); contains similarity to Interpro domains IPR001841 (Zinc finger, RING-type), IPR043472 (Macro domain-like), IPR036866 (Ribonuclease Z/Hydroxyacylglutathione hydrolase-like), IPR039399 (Deltex, C-terminal domain superfamily), IPR000175 (Sodium:neurotransmitter symporter), IPR036388 (Winged helix-like DNA-binding domain superfamily), IPR039396 (Deltex, C-terminal), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR037272 (Sodium:neurotransmitter symporter superfamily), IPR001279 (Metallo-beta-lactamase) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00089608 | ||||
| Corresponding_transcript | PPA00054.1 | |||||
| Corresponding_protein | PP60072 | |||||
| Corresponding_oligo_set (16) | ||||||
| Matching_cDNA | FG104413 | Inferred_automatically | transcript_builder.pl | |||
| CN656570 | Inferred_automatically | transcript_builder.pl | ||||
| Microarray_results (16) | ||||||
| RNASeq_FPKM | WBls:0000032 | 4.1688 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 15.5895 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S57-20.36 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
