WormBase Tree Display for CDS: PPA00061
expand all nodes | collapse all nodes | view schema
PPA00061 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 162 | |||
310 | 399 | |||||
506 | 627 | |||||
865 | 931 | |||||
1011 | 1070 | |||||
1315 | 1383 | |||||
1719 | 1847 | |||||
2019 | 2161 | |||||
2291 | 2324 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S57-21.53 | ||
TREEFAM | TREEFAM_ID | TF313827 | ||||
DB_remark | PPA-AAKB-1 protein; contains similarity to Pfam domains PF04739 (5'-AMP-activated protein kinase beta subunit, interaction domain), PF16561 (Glycogen recognition site of AMP-activated protein kinase); contains similarity to Interpro domains IPR014756 (Immunoglobulin E-set), IPR006828 (Association with the SNF1 complex (ASC) domain), IPR037256 (ASC domain superfamily), IPR013783 (Immunoglobulin-like fold), IPR032640 (AMP-activated protein kinase, glycogen-binding domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00089615 | ||||
Corresponding_transcript | PPA00061.1 | |||||
Corresponding_protein | PP65079 | |||||
Corresponding_oligo_set | GPL14372_Probes_54945 | |||||
GPL14372_Probes_54946 | ||||||
GPL14372_Probes_54948 | ||||||
Microarray_results | GPL14372_Probes_54945 | |||||
GPL14372_Probes_54946 | ||||||
GPL14372_Probes_54948 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 11.3304 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S57-21.53 | Curator_confirmed | WBPerson4055 | |||
Method | curated |