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WormBase Tree Display for CDS: PPA00061

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Name Class

PPA00061SMapS_parentSequencePPA_ChrI
StructureSource_exons1162
310399
506627
865931
10111070
13151383
17191847
20192161
22912324
DB_infoDatabasepristionchus.orgcdsgene-UMM-S57-21.53
TREEFAMTREEFAM_IDTF313827
DB_remarkPPA-AAKB-1 protein; contains similarity to Pfam domains PF04739 (5'-AMP-activated protein kinase beta subunit, interaction domain), PF16561 (Glycogen recognition site of AMP-activated protein kinase); contains similarity to Interpro domains IPR014756 (Immunoglobulin E-set), IPR006828 (Association with the SNF1 complex (ASC) domain), IPR037256 (ASC domain superfamily), IPR013783 (Immunoglobulin-like fold), IPR032640 (AMP-activated protein kinase, glycogen-binding domain)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPredicted
VisibleGeneWBGene00089615
Corresponding_transcriptPPA00061.1
Corresponding_proteinPP65079
Corresponding_oligo_setGPL14372_Probes_54945
GPL14372_Probes_54946
GPL14372_Probes_54948
Microarray_resultsGPL14372_Probes_54945
GPL14372_Probes_54946
GPL14372_Probes_54948
RNASeq_FPKMWBls:00000320From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:000010111.3304From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Remark[171116 mh6] renamed from gene-UMM-S57-21.53Curator_confirmedWBPerson4055
Methodcurated