WormBase Tree Display for CDS: PPA00095
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PPA00095 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 78 | |||
325 | 459 | |||||
703 | 756 | |||||
1117 | 1245 | |||||
1653 | 1715 | |||||
1789 | 1848 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S57-23.56 | ||
TREEFAM | TREEFAM_ID | TF326409 | ||||
DB_remark | contains similarity to Pfam domain PF05773 (RWD domain); contains similarity to Interpro domains IPR006575 (RWD domain), IPR016135 (Ubiquitin-conjugating enzyme/RWD-like), IPR042770 (RWD domain-containing protein 4) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00089649 | ||||
Corresponding_transcript | PPA00095.1 | |||||
Corresponding_protein | PP59771 | |||||
Corresponding_oligo_set | GPL14372_Probes_55039 | |||||
GPL14372_Probes_55040 | ||||||
GPL14372_Probes_55041 | ||||||
GPL14372_Probes_55043 | ||||||
Microarray_results | GPL14372_Probes_55039 | |||||
GPL14372_Probes_55040 | ||||||
GPL14372_Probes_55041 | ||||||
GPL14372_Probes_55043 | ||||||
RNASeq_FPKM | WBls:0000032 | 91.8642 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 84.4287 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S57-23.56 | Curator_confirmed | WBPerson4055 | |||
Method | curated |