WormBase Tree Display for CDS: PPA00100
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| PPA00100 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (31) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMS-S57-23.13 | ||
| TREEFAM | TREEFAM_ID | TF314577 | ||||
| DB_remark | contains similarity to Pfam domains PF00088 (Trefoil (P-type) domain), PF01055 (Glycosyl hydrolases family 31 TIM-barrel domain), PF13802 (Glycosyl hydrolase 31 N-terminal galactose mutarotase-like domain), PF16863 (); contains similarity to Interpro domains IPR000519 (P-type trefoil domain), IPR017853 (Glycoside hydrolase superfamily), IPR031727 (), IPR000322 (Glycoside hydrolase family 31, TIM barrel domain), IPR011013 (Galactose mutarotase-like domain superfamily), IPR013780 (Glycosyl hydrolase, all-beta), IPR025887 (Glycoside hydrolase family 31, N-terminal domain) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00089654 | ||||
| Corresponding_transcript | PPA00100.1 | |||||
| Corresponding_protein | PP56837 | |||||
| Corresponding_oligo_set | GPL14372_Probes_55052 | |||||
| GPL14372_Probes_55053 | ||||||
| GPL14372_Probes_55054 | ||||||
| GPL14372_Probes_55055 | ||||||
| GPL14372_Probes_55056 | ||||||
| GPL14372_Probes_55057 | ||||||
| GPL14372_Probes_55058 | ||||||
| GPL14372_Probes_55059 | ||||||
| GPL14372_Probes_55060 | ||||||
| GPL14372_Probes_55061 | ||||||
| Matching_cDNA | AW097835 | Inferred_automatically | transcript_builder.pl | |||
| Microarray_results | GPL14372_Probes_55052 | |||||
| GPL14372_Probes_55053 | ||||||
| GPL14372_Probes_55054 | ||||||
| GPL14372_Probes_55055 | ||||||
| GPL14372_Probes_55056 | ||||||
| GPL14372_Probes_55057 | ||||||
| GPL14372_Probes_55058 | ||||||
| GPL14372_Probes_55059 | ||||||
| GPL14372_Probes_55060 | ||||||
| GPL14372_Probes_55061 | ||||||
| RNASeq_FPKM | WBls:0000032 | 2.47924 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 5.85574 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMS-S57-23.13 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
