WormBase Tree Display for CDS: PPA00188
expand all nodes | collapse all nodes | view schema
PPA00188 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 119 | |||
895 | 947 | |||||
1447 | 1529 | |||||
1739 | 1826 | |||||
2350 | 2375 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S57-29.2 | ||
TREEFAM | TREEFAM_ID | TF103008 | ||||
DB_remark | contains similarity to Pfam domain PF00808 (Histone-like transcription factor (CBF/NF-Y) and archaeal histone); contains similarity to Interpro domains IPR009072 (Histone-fold), IPR003958 (Transcription factor CBF/NF-Y/archaeal histone domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00089742 | ||||
Corresponding_transcript | PPA00188.1 | |||||
Corresponding_protein | PP68949 | |||||
Corresponding_oligo_set | GPL14372_Probes_55221 | |||||
GPL14372_Probes_55223 | ||||||
Matching_cDNA | CO870913 | Inferred_automatically | transcript_builder.pl | |||
CN657621 | Inferred_automatically | transcript_builder.pl | ||||
CO870983 | Inferred_automatically | transcript_builder.pl | ||||
CO870796 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results | GPL14372_Probes_55221 | |||||
GPL14372_Probes_55223 | ||||||
RNASeq_FPKM | WBls:0000032 | 60.4782 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S57-29.2 | Curator_confirmed | WBPerson4055 | |||
Method | curated |