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WormBase Tree Display for CDS: PPA00188

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Name Class

PPA00188SMapS_parentSequencePPA_ChrI
StructureSource_exons1119
895947
14471529
17391826
23502375
DB_infoDatabasepristionchus.orgcdsgene-UMM-S57-29.2
TREEFAMTREEFAM_IDTF103008
DB_remarkcontains similarity to Pfam domain PF00808 (Histone-like transcription factor (CBF/NF-Y) and archaeal histone); contains similarity to Interpro domains IPR009072 (Histone-fold), IPR003958 (Transcription factor CBF/NF-Y/archaeal histone domain)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPartially_confirmed
VisibleGeneWBGene00089742
Corresponding_transcriptPPA00188.1
Corresponding_proteinPP68949
Corresponding_oligo_setGPL14372_Probes_55221
GPL14372_Probes_55223
Matching_cDNACO870913Inferred_automaticallytranscript_builder.pl
CN657621Inferred_automaticallytranscript_builder.pl
CO870983Inferred_automaticallytranscript_builder.pl
CO870796Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14372_Probes_55221
GPL14372_Probes_55223
RNASeq_FPKMWBls:000003260.4782From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:00001010From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Remark[171116 mh6] renamed from gene-UMM-S57-29.2Curator_confirmedWBPerson4055
Methodcurated