WormBase Tree Display for CDS: PPA00215
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PPA00215 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (15) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMA-S57-30.30 | ||
DB_remark | contains similarity to Pfam domains PF00091 (Tubulin/FtsZ family, GTPase domain), PF03953 (Tubulin C-terminal domain); contains similarity to Interpro domains IPR002452 (Alpha tubulin), IPR000217 (Tubulin), IPR003008 (Tubulin/FtsZ, GTPase domain), IPR023123 (Tubulin, C-terminal), IPR018316 (Tubulin/FtsZ, 2-layer sandwich domain), IPR037103 (Tubulin/FtsZ-like, C-terminal domain), IPR036525 (Tubulin/FtsZ, GTPase domain superfamily), IPR008280 (Tubulin/FtsZ, C-terminal) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Confirmed | |||||
Visible | Gene | WBGene00089769 | ||||
Corresponding_transcript | PPA00215.1 | |||||
Corresponding_protein | PP67644 | |||||
Corresponding_oligo_set | GPL14372_Probes_9585 | |||||
Matching_cDNA | FE938884 | Inferred_automatically | transcript_builder.pl | |||
FE935068 | Inferred_automatically | transcript_builder.pl | ||||
AW114156 | Inferred_automatically | transcript_builder.pl | ||||
AI988791 | Inferred_automatically | transcript_builder.pl | ||||
BQ087995 | Inferred_automatically | transcript_builder.pl | ||||
AW097772 | Inferred_automatically | transcript_builder.pl | ||||
AW097265 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results | GPL14372_Probes_9585 | |||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 25.0046 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMA-S57-30.30 | Curator_confirmed | WBPerson4055 | |||
Method | curated |