WormBase Tree Display for CDS: PPA00216
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| PPA00216 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (26) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S57-30.63 | ||
| TREEFAM | TREEFAM_ID | TF105631 | ||||
| DB_remark | PPA-GFM-1 protein; contains similarity to Pfam domains PF00009 (Elongation factor Tu GTP binding domain), PF00679 (Elongation factor G C-terminus), PF03144 (Elongation factor Tu domain 2), PF03764 (Elongation factor G, domain IV), PF14492 (Elongation Factor G, domain III); contains similarity to Interpro domains IPR000795 (Translational (tr)-type GTP-binding domain), IPR005517 (Translation elongation factor EFG/EF2, domain IV), IPR004161 (Translation elongation factor EFTu-like, domain 2), IPR020568 (Ribosomal protein uS5 domain 2-type superfamily), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR041095 (Elongation Factor G, domain II), IPR014721 (Small ribosomal subunit protein uS5 domain 2-type fold, subgroup), IPR005225 (Small GTP-binding protein domain), IPR009000 (Translation protein, beta-barrel domain superfamily), IPR035647 (EF-G domain III/V-like), IPR000640 (Elongation factor EFG, domain V-like), IPR004540 (Translation elongation factor EFG/EF2) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00089770 | ||||
| Corresponding_transcript | PPA00216.1 | |||||
| Corresponding_protein | PP61160 | |||||
| Corresponding_oligo_set | GPL14372_Probes_55259 | |||||
| GPL14372_Probes_55260 | ||||||
| GPL14372_Probes_55261 | ||||||
| Matching_cDNA | EB184237 | Inferred_automatically | transcript_builder.pl | |||
| FE932755 | Inferred_automatically | transcript_builder.pl | ||||
| Microarray_results | GPL14372_Probes_55259 | |||||
| GPL14372_Probes_55260 | ||||||
| GPL14372_Probes_55261 | ||||||
| RNASeq_FPKM | WBls:0000032 | 114.941 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 30.7685 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S57-30.63 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
