WormBase Tree Display for CDS: PPA00217
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PPA00217 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (16) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMA-S57-31.33 | ||
DB_remark | PPA-EFL-2 protein; contains similarity to Pfam domain PF02319 (E2F/DP family winged-helix DNA-binding domain); contains similarity to Interpro domains IPR037241 (E2F-DP heterodimerization region), IPR015633 (E2F Family), IPR036390 (Winged helix DNA-binding domain superfamily), IPR036388 (Winged helix-like DNA-binding domain superfamily), IPR003316 (E2F/DP family, winged-helix DNA-binding domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00089771 | ||||
Corresponding_transcript | PPA00217.1 | |||||
Corresponding_protein | PP54640 | |||||
Corresponding_oligo_set | GPL14372_Probes_55262 | |||||
Microarray_results | GPL14372_Probes_55262 | |||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 5.86384 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMA-S57-31.33 | Curator_confirmed | WBPerson4055 | |||
Method | curated |