WormBase Tree Display for CDS: PPA00221
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PPA00221 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 120 | |||
166 | 210 | |||||
417 | 479 | |||||
528 | 599 | |||||
646 | 736 | |||||
1103 | 1170 | |||||
1457 | 1577 | |||||
1960 | 2045 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S57-31.57 | ||
DB_remark | contains similarity to Pfam domain PF08208 (DNA-directed RNA polymerase I subunit RPA34.5); contains similarity to Interpro domain IPR013240 (DNA-directed RNA polymerase I, subunit RPA34) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00089775 | ||||
Corresponding_transcript | PPA00221.1 | |||||
Corresponding_protein | PP32574 | |||||
Corresponding_oligo_set | GPL14372_Probes_55265 | |||||
GPL14372_Probes_55266 | ||||||
GPL14372_Probes_55268 | ||||||
GPL14372_Probes_55269 | ||||||
Matching_cDNA | FG097272 | Inferred_automatically | transcript_builder.pl | |||
Microarray_results | GPL14372_Probes_55265 | |||||
GPL14372_Probes_55266 | ||||||
GPL14372_Probes_55268 | ||||||
GPL14372_Probes_55269 | ||||||
RNASeq_FPKM | WBls:0000032 | 55.7548 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 82.3358 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S57-31.57 | Curator_confirmed | WBPerson4055 | |||
Method | curated |