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WormBase Tree Display for CDS: PPA00221

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Name Class

PPA00221SMapS_parentSequencePPA_ChrI
StructureSource_exons1120
166210
417479
528599
646736
11031170
14571577
19602045
DB_infoDatabasepristionchus.orgcdsgene-UMM-S57-31.57
DB_remarkcontains similarity to Pfam domain PF08208 (DNA-directed RNA polymerase I subunit RPA34.5); contains similarity to Interpro domain IPR013240 (DNA-directed RNA polymerase I, subunit RPA34)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPartially_confirmed
VisibleGeneWBGene00089775
Corresponding_transcriptPPA00221.1
Corresponding_proteinPP32574
Corresponding_oligo_setGPL14372_Probes_55265
GPL14372_Probes_55266
GPL14372_Probes_55268
GPL14372_Probes_55269
Matching_cDNAFG097272Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14372_Probes_55265
GPL14372_Probes_55266
GPL14372_Probes_55268
GPL14372_Probes_55269
RNASeq_FPKMWBls:000003255.7548From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:000010182.3358From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Remark[171116 mh6] renamed from gene-UMM-S57-31.57Curator_confirmedWBPerson4055
Methodcurated