WormBase Tree Display for CDS: PPA00235
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| PPA00235 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (33) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S57-32.52 | ||
| TREEFAM | TREEFAM_ID | TF319048 | ||||
| DB_remark | PPA-CNG-1 protein; contains similarity to Pfam domains PF00027 (Cyclic nucleotide-binding domain), PF01674 (Lipase (class 2)); contains similarity to Interpro domains IPR018490 (Cyclic nucleotide-binding domain superfamily), IPR000595 (Cyclic nucleotide-binding domain), IPR029058 (Alpha/Beta hydrolase fold), IPR002918 (Lipase EstA/Esterase EstB), IPR014710 (RmlC-like jelly roll fold) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Predicted | |||||
| Visible | Gene | WBGene00089789 | ||||
| Corresponding_transcript | PPA00235.1 | |||||
| Corresponding_protein | PP58262 | |||||
| Corresponding_oligo_set | GPL14372_Probes_55286 | |||||
| GPL14372_Probes_55287 | ||||||
| GPL14372_Probes_55288 | ||||||
| GPL14372_Probes_55289 | ||||||
| GPL14372_Probes_55293 | ||||||
| GPL14372_Probes_55294 | ||||||
| GPL14372_Probes_55295 | ||||||
| Microarray_results | GPL14372_Probes_55286 | |||||
| GPL14372_Probes_55287 | ||||||
| GPL14372_Probes_55288 | ||||||
| GPL14372_Probes_55289 | ||||||
| GPL14372_Probes_55293 | ||||||
| GPL14372_Probes_55294 | ||||||
| GPL14372_Probes_55295 | ||||||
| RNASeq_FPKM | WBls:0000032 | 4.50698 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 1.33063 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S57-32.52 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
