WormBase Tree Display for CDS: PPA00239
expand all nodes | collapse all nodes | view schema
PPA00239 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (54) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S57-32.53 | ||
TREEFAM | TREEFAM_ID | TF300655 | ||||
DB_remark | contains similarity to Pfam domains PF00326 (Prolyl oligopeptidase family), PF02897 (Prolyl oligopeptidase, N-terminal beta-propeller domain); contains similarity to Interpro domains IPR001375 (Peptidase S9, prolyl oligopeptidase, catalytic domain), IPR002470 (Peptidase S9A, prolyl oligopeptidase), IPR029058 (Alpha/Beta hydrolase fold), IPR023302 (Peptidase S9A, N-terminal domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00089793 | ||||
Corresponding_transcript | PPA00239.1 | |||||
Corresponding_protein | PP62422 | |||||
Corresponding_oligo_set | GPL14372_Probes_55296 | |||||
GPL14372_Probes_55299 | ||||||
GPL14372_Probes_55300 | ||||||
GPL14372_Probes_55302 | ||||||
GPL14372_Probes_55303 | ||||||
GPL14372_Probes_55304 | ||||||
GPL14372_Probes_55305 | ||||||
GPL14372_Probes_55306 | ||||||
Microarray_results | GPL14372_Probes_55296 | |||||
GPL14372_Probes_55299 | ||||||
GPL14372_Probes_55300 | ||||||
GPL14372_Probes_55302 | ||||||
GPL14372_Probes_55303 | ||||||
GPL14372_Probes_55304 | ||||||
GPL14372_Probes_55305 | ||||||
GPL14372_Probes_55306 | ||||||
RNASeq_FPKM | WBls:0000032 | 5.09372 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 16.3271 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S57-32.53 | Curator_confirmed | WBPerson4055 | |||
Method | curated |